Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   BEN15_RS05355 Genome accession   NZ_CP016877
Coordinates   996178..996621 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 991178..1001621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS05335 (BEN15_05335) - 991697..992453 (-) 757 Protein_969 NUDIX domain-containing protein -
  BEN15_RS05340 (BEN15_05340) - 992517..993623 (-) 1107 WP_065972961.1 AAA family ATPase -
  BEN15_RS05345 (BEN15_05345) gdhA 993967..995319 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  BEN15_RS05350 (BEN15_05350) - 995577..995987 (+) 411 WP_065972962.1 peptide deformylase -
  BEN15_RS05355 (BEN15_05355) rcrR 996178..996621 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  BEN15_RS05360 (BEN15_05360) rcrP 996625..998439 (+) 1815 WP_065972963.1 ABC transporter ATP-binding protein Regulator
  BEN15_RS05365 (BEN15_05365) rcrQ 998429..1000207 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  BEN15_RS05370 (BEN15_05370) - 1000363..1000734 (+) 372 WP_231107115.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=193313 BEN15_RS05355 WP_002945408.1 996178..996621(+) (rcrR) [Streptococcus thermophilus strain KLDS 3.1003]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=193313 BEN15_RS05355 WP_002945408.1 996178..996621(+) (rcrR) [Streptococcus thermophilus strain KLDS 3.1003]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAGTTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAGGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment