Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   S100757_RS02440 Genome accession   NZ_CP021499
Coordinates   474480..474914 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain SRCM100757     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469480..479914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100757_RS02410 (S100757_00470) ydaD 470127..470987 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  S100757_RS02415 (S100757_00471) lyxE 471003..471506 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  S100757_RS02420 (S100757_00472) ydaF 471594..472145 (+) 552 WP_014478866.1 GNAT family protein -
  S100757_RS02425 (S100757_00473) ydaG 472223..472645 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  S100757_RS02430 (S100757_00474) amj 473151..473960 (+) 810 WP_014478868.1 lipid II flippase Amj -
  S100757_RS02435 (S100757_00475) ydzA 474005..474295 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  S100757_RS02440 (S100757_00476) lrpC 474480..474914 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  S100757_RS02445 (S100757_00477) topB 474979..477162 (+) 2184 WP_087614305.1 DNA topoisomerase III -
  S100757_RS02450 (S100757_00478) ephJ 477365..478453 (+) 1089 WP_072175525.1 lipoprotein YdaJ -
  S100757_RS02455 (S100757_00479) epsK 478434..479285 (+) 852 WP_087614306.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=193313 S100757_RS02440 WP_003246585.1 474480..474914(+) (lrpC) [Bacillus subtilis subsp. subtilis strain SRCM100757]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=193313 S100757_RS02440 WP_003246585.1 474480..474914(+) (lrpC) [Bacillus subtilis subsp. subtilis strain SRCM100757]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
TAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment