Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   BEN15_RS00265 Genome accession   NZ_CP016877
Coordinates   54313..55806 (-) Length   497 a.a.
NCBI ID   WP_065972442.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 49313..60806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS00235 (BEN15_00235) - 49443..49820 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  BEN15_RS00240 (BEN15_00240) - 49825..50523 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  BEN15_RS00245 (BEN15_00245) - 50535..51320 (+) 786 WP_002951425.1 hypothetical protein -
  BEN15_RS00250 (BEN15_00250) - 51370..52299 (-) 930 Protein_45 ATP-binding cassette domain-containing protein -
  BEN15_RS00255 (BEN15_00255) amiE 52292..53377 (-) 1086 WP_065972441.1 ABC transporter ATP-binding protein Regulator
  BEN15_RS00260 (BEN15_00260) amiD 53387..54313 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  BEN15_RS00265 (BEN15_00265) amiC 54313..55806 (-) 1494 WP_065972442.1 ABC transporter permease Regulator
  BEN15_RS00270 (BEN15_00270) amiA 55868..57835 (-) 1968 WP_065972443.1 peptide ABC transporter substrate-binding protein Regulator
  BEN15_RS00275 (BEN15_00275) - 58192..59440 (+) 1249 Protein_50 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55649.53 Da        Isoelectric Point: 10.0972

>NTDB_id=193276 BEN15_RS00265 WP_065972442.1 54313..55806(-) (amiC) [Streptococcus thermophilus strain KLDS 3.1003]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=193276 BEN15_RS00265 WP_065972442.1 54313..55806(-) (amiC) [Streptococcus thermophilus strain KLDS 3.1003]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAGGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

99.598

100

0.996
  amiC Streptococcus thermophilus LMG 18311

99.598

100

0.996
  amiC Streptococcus salivarius strain HSISS4

96.982

100

0.97

Multiple sequence alignment