Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   BE844_RS11930 Genome accession   NZ_CP016873
Coordinates   2656951..2657400 (-) Length   149 a.a.
NCBI ID   WP_011214847.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2651951..2662400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE844_RS11910 (BE844_11910) - 2652225..2652617 (-) 393 WP_011214843.1 hypothetical protein -
  BE844_RS11915 (BE844_11915) - 2652754..2653131 (+) 378 WP_011214844.1 hypothetical protein -
  BE844_RS11920 (BE844_11920) - 2653333..2654640 (+) 1308 WP_011214845.1 tetratricopeptide repeat protein -
  BE844_RS11925 (BE844_11925) comEC 2654666..2656873 (-) 2208 WP_011214846.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BE844_RS11930 (BE844_11930) pilE 2656951..2657400 (-) 450 WP_011214847.1 type IV pilin protein Machinery gene
  BE844_RS11935 (BE844_11935) - 2657412..2660921 (-) 3510 WP_011214848.1 pilus assembly protein -
  BE844_RS11940 (BE844_11940) - 2660934..2661446 (-) 513 WP_027219362.1 pilus assembly protein -

Sequence


Protein


Download         Length: 149 a.a.        Molecular weight: 16288.54 Da        Isoelectric Point: 7.0760

>NTDB_id=193180 BE844_RS11930 WP_011214847.1 2656951..2657400(-) (pilE) [Legionella pneumophila subsp. pneumophila strain FFI105]
MLSHIDFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=193180 BE844_RS11930 WP_011214847.1 2656951..2657400(-) (pilE) [Legionella pneumophila subsp. pneumophila strain FFI105]
ATGCTCAGTCATATAGATTTTATGAAGAATAGCCGTATGAAACAATCGGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGCTACTCACAGAATTTTTCTTATGCTGCGGCGTGTGGCGCC
TTACCAGCGTTTCCTCAAACAACTCCGAACGGATACTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACCTT
AACTGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAACCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCTGCCAATGCGCAACCAGAATGCTGGAATCCCGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

98.658

100

0.987

  pilE Legionella pneumophila strain ERS1305867

98.658

100

0.987


Multiple sequence alignment