Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BE844_RS05060 Genome accession   NZ_CP016873
Coordinates   1164212..1164916 (+) Length   234 a.a.
NCBI ID   WP_412768607.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI105     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1159212..1169916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE844_RS05035 (BE844_05035) - 1160444..1161322 (+) 879 WP_070322389.1 lpg2327 family Dot/Icm T4SS effector -
  BE844_RS05040 (BE844_05040) lem22 1161586..1161969 (+) 384 WP_061716880.1 Dot/Icm T4SS effector Lem22 -
  BE844_RS05045 (BE844_05045) - 1162163..1162393 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  BE844_RS05050 (BE844_05050) - 1162374..1163270 (+) 897 WP_011216221.1 polyprenyl synthetase family protein -
  BE844_RS05055 (BE844_05055) bioC 1163314..1164168 (-) 855 WP_011216222.1 malonyl-ACP O-methyltransferase BioC -
  BE844_RS05060 (BE844_05060) comFC 1164212..1164916 (+) 705 WP_412768607.1 ComF family protein Machinery gene
  BE844_RS05065 (BE844_05065) - 1164943..1166016 (-) 1074 WP_061716884.1 M50 family metallopeptidase -
  BE844_RS05070 (BE844_05070) - 1166073..1166351 (-) 279 WP_011216225.1 hypothetical protein -
  BE844_RS15660 - 1166369..1166545 (+) 177 WP_014844483.1 hypothetical protein -
  BE844_RS05075 (BE844_05075) hemA 1166669..1167943 (+) 1275 WP_011216227.1 glutamyl-tRNA reductase -
  BE844_RS05080 (BE844_05080) prfA 1167927..1169015 (+) 1089 WP_061716886.1 peptide chain release factor 1 -
  BE844_RS05085 (BE844_05085) prmC 1169008..1169871 (+) 864 WP_061716888.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26744.34 Da        Isoelectric Point: 9.2792

>NTDB_id=193166 BE844_RS05060 WP_412768607.1 1164212..1164916(+) (comFC) [Legionella pneumophila subsp. pneumophila strain FFI105]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCIEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVPPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=193166 BE844_RS05060 WP_412768607.1 1164212..1164916(+) (comFC) [Legionella pneumophila subsp. pneumophila strain FFI105]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATAGAGTTTATGAAACAACTTGGATCATGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGTCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAACTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

99.145

100

0.991
  comFC Legionella pneumophila strain ERS1305867

99.49

83.761

0.833

Multiple sequence alignment