Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   BE843_RS12015 Genome accession   NZ_CP016872
Coordinates   2643132..2643791 (+) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI104     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2638132..2648791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE843_RS11990 (BE843_11990) rplU 2638850..2639161 (+) 312 WP_010948351.1 50S ribosomal protein L21 -
  BE843_RS11995 (BE843_11995) rpmA 2639174..2639452 (+) 279 WP_010948350.1 50S ribosomal protein L27 -
  BE843_RS12000 (BE843_12000) cgtA 2639668..2640693 (+) 1026 WP_027223998.1 Obg family GTPase CgtA -
  BE843_RS12005 (BE843_12005) - 2640652..2641749 (-) 1098 WP_011947565.1 competence/damage-inducible protein A -
  BE843_RS12010 (BE843_12010) phhA 2642189..2643007 (+) 819 WP_013101913.1 phenylalanine 4-monooxygenase -
  BE843_RS12015 (BE843_12015) letA 2643132..2643791 (+) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  BE843_RS12020 (BE843_12020) uvrC 2643803..2645659 (+) 1857 WP_011947562.1 excinuclease ABC subunit UvrC -
  BE843_RS12025 (BE843_12025) lcl 2645683..2646957 (-) 1275 WP_070322308.1 collagen-like adhesin Lcl -
  BE843_RS12030 (BE843_12030) - 2647125..2647784 (-) 660 WP_011947560.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=193142 BE843_RS12015 WP_011947563.1 2643132..2643791(+) (letA) [Legionella pneumophila subsp. pneumophila strain FFI104]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=193142 BE843_RS12015 WP_011947563.1 2643132..2643791(+) (letA) [Legionella pneumophila subsp. pneumophila strain FFI104]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTGTTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTAGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1

Multiple sequence alignment