Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   BE842_RS14100 Genome accession   NZ_CP016870
Coordinates   3152962..3153411 (-) Length   149 a.a.
NCBI ID   WP_011214847.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3147962..3158411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE842_RS14080 (BE842_14080) - 3148236..3148628 (-) 393 WP_011214843.1 hypothetical protein -
  BE842_RS14085 (BE842_14085) - 3148765..3149142 (+) 378 WP_011214844.1 hypothetical protein -
  BE842_RS14090 (BE842_14090) - 3149344..3150651 (+) 1308 WP_011214845.1 tetratricopeptide repeat protein -
  BE842_RS14095 (BE842_14095) comEC 3150677..3152884 (-) 2208 WP_011214846.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BE842_RS14100 (BE842_14100) pilE 3152962..3153411 (-) 450 WP_011214847.1 type IV pilin protein Machinery gene
  BE842_RS14105 (BE842_14105) - 3153423..3156932 (-) 3510 WP_011214848.1 pilus assembly protein -
  BE842_RS14110 (BE842_14110) - 3156945..3157457 (-) 513 WP_011214849.1 pilus assembly protein -

Sequence


Protein


Download         Length: 149 a.a.        Molecular weight: 16288.54 Da        Isoelectric Point: 7.0760

>NTDB_id=193105 BE842_RS14100 WP_011214847.1 3152962..3153411(-) (pilE) [Legionella pneumophila subsp. pneumophila strain FFI103]
MLSHIDFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=193105 BE842_RS14100 WP_011214847.1 3152962..3153411(-) (pilE) [Legionella pneumophila subsp. pneumophila strain FFI103]
ATGCTCAGTCATATAGATTTTATGAAGAATAGCCGTATGAAACAATCGGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGCTACTCACAGAATTTTTCTTATGCTGCGGCGTGTGGCGCC
TTACCAGCGTTTCCTCAAACAACTCCGAACGGATACTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACCTT
AACTGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAACCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCTGCCAATGCGCAACCAGAATGCTGGAATCCCGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

98.658

100

0.987

  pilE Legionella pneumophila strain ERS1305867

98.658

100

0.987


Multiple sequence alignment