Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CCL28_RS06535 Genome accession   NZ_CP021454
Coordinates   1272076..1272813 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain H105     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1267076..1277813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCL28_RS06505 (CCL28_06505) yfiL 1267235..1267600 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  CCL28_RS06510 (CCL28_06510) aroF 1267810..1268880 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CCL28_RS06515 (CCL28_06515) tyrA 1268891..1270012 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CCL28_RS06520 (CCL28_06520) pheA 1270055..1271215 (-) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  CCL28_RS26725 pheL 1271314..1271361 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CCL28_RS06525 (CCL28_06525) raiA 1271465..1271806 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CCL28_RS06535 (CCL28_06535) comL 1272076..1272813 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CCL28_RS06540 (CCL28_06540) rluD 1272948..1273928 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CCL28_RS06545 (CCL28_06545) yfiH 1273925..1274656 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  CCL28_RS06550 (CCL28_06550) clpC 1274786..1277359 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=193085 CCL28_RS06535 WP_000197686.1 1272076..1272813(-) (comL) [Escherichia coli strain H105]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=193085 CCL28_RS06535 WP_000197686.1 1272076..1272813(-) (comL) [Escherichia coli strain H105]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment