Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   BE841_RS09540 Genome accession   NZ_CP016868
Coordinates   2189084..2189533 (+) Length   149 a.a.
NCBI ID   WP_011214847.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2184084..2194533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE841_RS09530 (BE841_09530) - 2185038..2185550 (+) 513 WP_011214849.1 pilus assembly protein -
  BE841_RS09535 (BE841_09535) - 2185563..2189072 (+) 3510 WP_011214848.1 pilus assembly protein -
  BE841_RS09540 (BE841_09540) pilE 2189084..2189533 (+) 450 WP_011214847.1 type IV pilin protein Machinery gene
  BE841_RS09545 (BE841_09545) comEC 2189611..2191818 (+) 2208 WP_011214846.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BE841_RS09550 (BE841_09550) - 2191844..2193151 (-) 1308 WP_011214845.1 tetratricopeptide repeat protein -
  BE841_RS09555 (BE841_09555) - 2193353..2193730 (-) 378 WP_011214844.1 hypothetical protein -
  BE841_RS09560 (BE841_09560) - 2193867..2194259 (+) 393 WP_011214843.1 hypothetical protein -

Sequence


Protein


Download         Length: 149 a.a.        Molecular weight: 16288.54 Da        Isoelectric Point: 7.0760

>NTDB_id=193056 BE841_RS09540 WP_011214847.1 2189084..2189533(+) (pilE) [Legionella pneumophila subsp. pneumophila strain FFI102]
MLSHIDFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=193056 BE841_RS09540 WP_011214847.1 2189084..2189533(+) (pilE) [Legionella pneumophila subsp. pneumophila strain FFI102]
ATGCTCAGTCATATAGATTTTATGAAGAATAGCCGTATGAAACAATCGGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGCTACTCACAGAATTTTTCTTATGCTGCGGCGTGTGGCGCC
TTACCAGCGTTTCCTCAAACAACTCCGAACGGATACTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACCTT
AACTGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAACCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCTGCCAATGCGCAACCAGAATGCTGGAATCCCGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

98.658

100

0.987

  pilE Legionella pneumophila strain ERS1305867

98.658

100

0.987


Multiple sequence alignment