Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   AB987_RS06240 Genome accession   NZ_CP021347
Coordinates   1278556..1279191 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain B8300     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273556..1284191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB987_RS06220 (AB987_1250) - 1273634..1274449 (+) 816 WP_000011163.1 DsbC family protein -
  AB987_RS06225 (AB987_1251) - 1274694..1275995 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  AB987_RS06230 (AB987_1252) thrC 1276051..1277190 (+) 1140 WP_000063592.1 threonine synthase -
  AB987_RS06235 (AB987_1253) pbpG 1277297..1278343 (-) 1047 WP_031946417.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AB987_RS06240 (AB987_1254) letA 1278556..1279191 (+) 636 WP_000633799.1 response regulator Regulator
  AB987_RS06245 (AB987_1255) pilS 1279202..1280770 (+) 1569 WP_001160328.1 PAS domain-containing sensor histidine kinase Regulator
  AB987_RS06250 (AB987_1256) - 1280795..1282216 (+) 1422 WP_000840558.1 sigma-54 dependent transcriptional regulator -
  AB987_RS06255 (AB987_1257) - 1282220..1283404 (-) 1185 WP_000939106.1 S41 family peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=192899 AB987_RS06240 WP_000633799.1 1278556..1279191(+) (letA) [Acinetobacter baumannii strain B8300]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=192899 AB987_RS06240 WP_000633799.1 1278556..1279191(+) (letA) [Acinetobacter baumannii strain B8300]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCCGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTTGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCGTTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGCGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGTGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55
  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55