Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AB895_RS03990 Genome accession   NZ_CP021342
Coordinates   852241..852603 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain B8342     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 847241..857603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB895_RS03980 (AB895_0799) - 849519..851597 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  AB895_RS03985 (AB895_0800) - 851644..852180 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  AB895_RS03990 (AB895_0801) pilH 852241..852603 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  AB895_RS03995 (AB895_0802) pilG 852627..853010 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  AB895_RS04000 (AB895_0803) - 853168..854100 (-) 933 WP_002122868.1 IS5 family transposase -
  AB895_RS04005 (AB895_0804) - 854342..854980 (+) 639 WP_032059038.1 hypothetical protein -
  AB895_RS04010 (AB895_0805) - 855040..856158 (+) 1119 WP_032059039.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=192808 AB895_RS03990 WP_000101096.1 852241..852603(-) (pilH) [Acinetobacter baumannii strain B8342]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=192808 AB895_RS03990 WP_000101096.1 852241..852603(-) (pilH) [Acinetobacter baumannii strain B8342]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment