Detailed information NTG0192726

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BFC21_RS22370
• Genome accession: NZ_CP016849
• Coordinates: 4704409..4705269 (-)
• Length: 286 a.a.
• NCBI ID: WP_088378956.1
• Uniprot ID: -
• Organism: Pseudomonas sp. TMW 2.1634
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4699409..4710269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFC21_RS22335 (BFC21_21495)	-	4699935..4701236 (-)	1302	WP_088378951.1	NAD(P)/FAD-dependent oxidoreductase	-
BFC21_RS22340 (BFC21_21500)	-	4701303..4701476 (-)	174	WP_088378952.1	DUF3094 family protein	-
BFC21_RS22345 (BFC21_21505)	-	4701531..4702058 (-)	528	WP_086795850.1	MOSC domain-containing protein	-
BFC21_RS22350 (BFC21_21510)	-	4702055..4702684 (-)	630	WP_088378953.1	DUF1780 domain-containing protein	-
BFC21_RS22355 (BFC21_21515)	-	4702794..4703480 (+)	687	WP_088378954.1	energy-coupling factor ABC transporter permease	-
BFC21_RS22360 (BFC21_21520)	yacG	4703584..4703787 (-)	204	WP_016779444.1	DNA gyrase inhibitor YacG	-
BFC21_RS22365 (BFC21_21525)	coaE	4703784..4704407 (-)	624	WP_088378955.1	dephospho-CoA kinase	-
BFC21_RS22370 (BFC21_21530)	pilD	4704409..4705269 (-)	861	WP_088378956.1	A24 family peptidase	Machinery gene
BFC21_RS22375 (BFC21_21535)	pilC	4705272..4706489 (-)	1218	WP_088378957.1	type II secretion system F family protein	Machinery gene
BFC21_RS22380 (BFC21_21540)	-	4706701..4707108 (+)	408	WP_088378958.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
BFC21_RS22390 (BFC21_21550)	-	4707401..4708891 (+)	1491	WP_162939367.1	DNA-3-methyladenine glycosylase 2	-
BFC21_RS22395 (BFC21_21555)	-	4708894..4709385 (+)	492	WP_088378960.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31401.30 Da
• Isoelectric Point: 8.3879

>NTDB_id=192726 BFC21_RS22370 WP_088378956.1 4704409..4705269(-) (pilD) [Pseudomonas sp. TMW 2.1634]
MIELLSHHPDAFIACALILGLLVGSFINVLAWRLPQMLERDWQAQARDILGLPEPARGPVYNLLRPRSHCPDCQHSLRAR
ENIPLLSYLFLRGKCSHCKTPISLRYPLTELACAALSAFVAWHFGFGAQAGWMLVLTWGLFAICLIDAEHQIVPDVLVFP
LLWLGLLLNSFSLFTTLGQAVWGAALGYASLWSVFWMFKLITGKDGMGYGDFKLLAVLGAWGGVAVLPLTILLSSMLGAA
AGVGLLLLRRARTSTPIPFAPYLAIAGWIALLWGGQITGFYWQVSV

Nucleotide

• Length: 861 bp

>NTDB_id=192726 BFC21_RS22370 WP_088378956.1 4704409..4705269(-) (pilD) [Pseudomonas sp. TMW 2.1634]
ATGATTGAATTGCTGAGCCATCACCCCGACGCATTTATCGCCTGCGCCCTGATTCTCGGCTTGCTGGTGGGCAGCTTTAT
AAATGTACTGGCGTGGCGCTTGCCCCAGATGCTTGAACGGGACTGGCAGGCCCAGGCGCGCGACATCCTGGGCTTGCCCG
AGCCGGCCAGGGGCCCTGTGTATAACCTGCTGCGCCCGCGCTCCCACTGCCCCGATTGCCAGCATTCACTGCGCGCCCGA
GAGAACATTCCGCTGCTGAGCTACCTGTTTTTACGCGGCAAGTGCTCACACTGCAAAACCCCGATCAGCCTGCGTTACCC
CCTTACTGAGCTGGCCTGCGCGGCATTGTCGGCTTTTGTTGCCTGGCATTTCGGTTTTGGCGCCCAGGCGGGCTGGATGC
TGGTGCTGACCTGGGGGTTATTCGCCATTTGCCTGATCGATGCCGAGCATCAAATCGTGCCCGACGTGCTGGTTTTCCCG
CTGCTCTGGCTGGGCTTGTTGCTCAACAGCTTCTCCCTGTTCACCACACTGGGGCAGGCCGTATGGGGCGCAGCGCTGGG
CTATGCAAGCCTGTGGTCGGTGTTCTGGATGTTCAAACTGATCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGC
TACTGGCCGTGCTCGGCGCCTGGGGCGGGGTTGCGGTTCTGCCGCTGACCATCCTGCTGTCTTCAATGCTGGGGGCCGCT
GCAGGGGTTGGGCTGTTGCTCTTGCGCCGGGCCAGGACCAGTACCCCGATCCCCTTTGCACCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGGTTTCGGTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-242)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	47.931	100	0.486
pilD	Acinetobacter baumannii D1279779	47.97	94.755	0.455
pilD	Acinetobacter nosocomialis M2	47.97	94.755	0.455
pilD	Vibrio campbellii strain DS40M4	44.912	99.65	0.448
pilD	Neisseria gonorrhoeae MS11	45.882	89.161	0.409