Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EC95JB1_RS17275 Genome accession   NZ_CP021335
Coordinates   3207087..3207824 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 95JB1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3202087..3212824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC95JB1_RS17260 (EC95JB1_01824) clpC 3202541..3205114 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  EC95JB1_RS17265 (EC95JB1_01825) yfiH 3205244..3205975 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  EC95JB1_RS17270 (EC95JB1_01826) rluD 3205972..3206952 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EC95JB1_RS17275 (EC95JB1_01827) comL 3207087..3207824 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EC95JB1_RS17285 (EC95JB1_01828) raiA 3208095..3208436 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EC95JB1_RS29950 pheL 3208540..3208587 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EC95JB1_RS17290 (EC95JB1_01830) pheA 3208686..3209846 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  EC95JB1_RS17295 (EC95JB1_01831) tyrA 3209889..3211010 (-) 1122 WP_000225214.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EC95JB1_RS17300 (EC95JB1_01832) aroF 3211021..3212091 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EC95JB1_RS17305 (EC95JB1_01833) yfiL 3212301..3212666 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=192673 EC95JB1_RS17275 WP_000197686.1 3207087..3207824(+) (comL) [Escherichia coli strain 95JB1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=192673 EC95JB1_RS17275 WP_000197686.1 3207087..3207824(+) (comL) [Escherichia coli strain 95JB1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376