Detailed information NTG0192547

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BER93_RS03925
• Genome accession: NZ_CP016833
• Coordinates: 875367..876755 (-)
• Length: 462 a.a.
• NCBI ID: WP_065975088.1
• Uniprot ID: -
• Organism: Xanthomonas fragariae isolate Fap29
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	873109..874446	875367..876755	flank	921

Gene organization within MGE regions

Location: 873109..876755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BER93_RS03920 (BER93_03920)	-	874517..875014 (-)	498	WP_231892748.1	Fic family protein	-
BER93_RS20085	-	875111..875293 (-)	183	WP_002812262.1	YhfG family protein	-
BER93_RS03925 (BER93_03925)	pilR	875367..876755 (-)	1389	WP_065975088.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 50014.47 Da
• Isoelectric Point: 6.5702

>NTDB_id=192547 BER93_RS03925 WP_065975088.1 875367..876755(-) (pilR) [Xanthomonas fragariae isolate Fap29]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPEQASRLLGDSSAMESLRATIGKVARSQ
APVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADTPGLFQAAHGGTLFLDEV
AELPLQMQVKLLRAIQEKSVRPVGASSEMLVDVRILSATHKDLGELVSNGRFRHDLYYRINVIELRVPPLRERGGDLPQL
AAAIIARLAHSHGRPIPLLTQSALDALDHYSFPGNVRELENILERALALAEADQISTSDLRLPAHGCHRLAAPSGSAAVE
PPEAVVDIDPASSALPSYIEQLERAAIKKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=192547 BER93_RS03925 WP_065975088.1 875367..876755(-) (pilR) [Xanthomonas fragariae isolate Fap29]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTCGGCCGCAT
GGGCTTGCGTATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGGATCGAACTGGTCACCGAGATCGCCAAGCACTATCCGCAGACTCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGATCTGGCAGTGGAAGCCTTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACCGCCTG
AACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCCCGCAGCCAG
GCACCGGTCTACATCGTCGGCGAATCGGGCGTTGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGAGCGCGCGC
GGCCGGGCCGTTCGTCCCGGTCAACTGCGGCGCCATTCCCGCCGAACTGATGGAGAGCGAATTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGGGCGCATGCCGACACGCCGGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGACGAAGTG
GCCGAGCTGCCGCTGCAGATGCAGGTCAAACTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCATCCAG
CGAAATGCTGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGATCTCGGCGAGCTGGTCTCCAACGGCCGTTTTCGTC
ACGACCTGTACTACCGCATCAACGTCATCGAACTGCGGGTCCCACCGCTGCGCGAACGCGGTGGCGACCTCCCGCAACTG
GCCGCCGCCATCATCGCGCGCCTGGCGCATAGCCATGGCCGCCCGATTCCGCTACTGACCCAATCCGCACTCGATGCGCT
CGACCACTACAGCTTCCCCGGCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCACTGGCCGAAGCCGACC
AGATCAGCACCAGCGACCTGCGCCTGCCCGCCCACGGCTGCCACCGTCTCGCCGCCCCCTCCGGCAGCGCCGCTGTCGAA
CCGCCCGAAGCCGTCGTCGACATCGACCCCGCCTCTTCCGCGCTACCGTCCTACATCGAGCAACTGGAACGCGCCGCGAT
CAAGAAAGCCCTAGAAGAAAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATTACGTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-305)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.69	99.784	0.626
pilR	Acinetobacter baumannii strain A118	49.569	100	0.498