Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   BEN31_RS10385 Genome accession   NZ_CP016784
Coordinates   1978024..1978221 (-) Length   65 a.a.
NCBI ID   WP_003211983.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1973024..1983221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS10360 (BEN31_10360) - 1973388..1974368 (-) 981 WP_045210037.1 ABC transporter ATP-binding protein -
  BEN31_RS10365 (BEN31_10365) - 1974537..1975331 (-) 795 WP_060595996.1 DUF2268 domain-containing protein -
  BEN31_RS10370 (BEN31_10370) fabF 1975409..1976650 (-) 1242 WP_034663293.1 beta-ketoacyl-ACP synthase II -
  BEN31_RS10375 (BEN31_10375) - 1976672..1977610 (-) 939 WP_066031040.1 beta-ketoacyl-ACP synthase III -
  BEN31_RS10380 (BEN31_10380) - 1977780..1978013 (+) 234 WP_034663296.1 hypothetical protein -
  BEN31_RS10385 (BEN31_10385) comZ 1978024..1978221 (-) 198 WP_003211983.1 ComZ family protein Regulator
  BEN31_RS10390 (BEN31_10390) med 1978232..1979194 (-) 963 WP_066031041.1 BMP family ABC transporter substrate-binding protein Regulator
  BEN31_RS10395 (BEN31_10395) - 1979285..1979860 (-) 576 WP_066031042.1 nad binding enzyme -
  BEN31_RS10400 (BEN31_10400) - 1979936..1980676 (-) 741 WP_060595993.1 hypothetical protein -
  BEN31_RS10405 (BEN31_10405) - 1980888..1981082 (+) 195 WP_003211779.1 YjzD family protein -
  BEN31_RS10410 (BEN31_10410) - 1981201..1982466 (-) 1266 WP_034663308.1 MFS transporter -
  BEN31_RS10415 (BEN31_10415) - 1982635..1982814 (-) 180 WP_034663316.1 YjzC family protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7391.42 Da        Isoelectric Point: 4.1652

>NTDB_id=192189 BEN31_RS10385 WP_003211983.1 1978024..1978221(-) (comZ) [Bacillus pumilus strain PDSLzg-1]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESEKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=192189 BEN31_RS10385 WP_003211983.1 1978024..1978221(-) (comZ) [Bacillus pumilus strain PDSLzg-1]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAGGCAAAAGAAGAATTAGATAAAGC
GGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTCATGCAAGAGGCATATGAGCTTG
GGAAAGCAGATGCAGAATCAGAAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

93.846

0.677

Multiple sequence alignment