Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BEN31_RS08250 Genome accession   NZ_CP016784
Coordinates   1566142..1567044 (-) Length   300 a.a.
NCBI ID   WP_034662389.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1561142..1572044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS08235 (BEN31_08235) xerC 1561518..1562435 (-) 918 WP_060596252.1 tyrosine recombinase XerC -
  BEN31_RS08240 (BEN31_08240) trmFO 1562498..1563802 (-) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BEN31_RS08245 (BEN31_08245) topA 1563873..1565948 (-) 2076 WP_060596250.1 type I DNA topoisomerase -
  BEN31_RS08250 (BEN31_08250) dprA 1566142..1567044 (-) 903 WP_034662389.1 DNA-processing protein DprA Machinery gene
  BEN31_RS08255 (BEN31_08255) sucD 1567108..1568010 (-) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  BEN31_RS08260 (BEN31_08260) sucC 1568033..1569193 (-) 1161 WP_012009945.1 ADP-forming succinate--CoA ligase subunit beta -
  BEN31_RS08265 (BEN31_08265) - 1569370..1569645 (-) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  BEN31_RS08270 (BEN31_08270) - 1569642..1571378 (-) 1737 WP_066030915.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34086.37 Da        Isoelectric Point: 8.5955

>NTDB_id=192179 BEN31_RS08250 WP_034662389.1 1566142..1567044(-) (dprA) [Bacillus pumilus strain PDSLzg-1]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETQHFKQDRSLQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWTIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=192179 BEN31_RS08250 WP_034662389.1 1566142..1567044(-) (dprA) [Bacillus pumilus strain PDSLzg-1]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACAACATTTCAAACAGGATCGATCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATACCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGACGATTGTCAGTGGCTTAGCAAAAGGAATTGATGGACTTGCACAT
AAAGAGTGCATTCGGAATAAAGGGAAAACCATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTCAATACATGGGAGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTATGTGAAACCAGAAAAGTGGCATT
TCCCAATGAGGAATCGTTTAATTAGTGCGCTGACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCGCTC
ATTACAGCGTATCAAGCACTTGAGCAAGGTAAAGAGGTATTTGCGGTTGCAGGATCTATCTTTGATCCTAATTCCACAGG
ACCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

38.542

96

0.37

Multiple sequence alignment