Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BEN31_RS05185 Genome accession   NZ_CP016784
Coordinates   967507..968310 (+) Length   267 a.a.
NCBI ID   WP_066030679.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 962507..973310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS05165 (BEN31_05165) - 962512..963366 (+) 855 WP_066030678.1 TlyA family RNA methyltransferase -
  BEN31_RS05170 (BEN31_05170) ahrC 963529..963978 (+) 450 WP_034661246.1 transcriptional regulator AhrC/ArgR -
  BEN31_RS05175 (BEN31_05175) recN 964012..965745 (+) 1734 WP_060596818.1 DNA repair protein RecN Machinery gene
  BEN31_RS05180 (BEN31_05180) spoIVB 965944..967221 (+) 1278 WP_034661244.1 SpoIVB peptidase -
  BEN31_RS05185 (BEN31_05185) spo0A 967507..968310 (+) 804 WP_066030679.1 sporulation transcription factor Spo0A Regulator
  BEN31_RS05195 (BEN31_05195) - 968767..969867 (+) 1101 WP_066030680.1 Rap family tetratricopeptide repeat protein -
  BEN31_RS05200 (BEN31_05200) - 970094..970831 (+) 738 WP_066030681.1 glycerophosphodiester phosphodiesterase -
  BEN31_RS05205 (BEN31_05205) - 970866..971102 (-) 237 WP_034661240.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29917.45 Da        Isoelectric Point: 6.6116

>NTDB_id=192173 BEN31_RS05185 WP_066030679.1 967507..968310(+) (spo0A) [Bacillus pumilus strain PDSLzg-1]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKNKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=192173 BEN31_RS05185 WP_066030679.1 967507..968310(+) (spo0A) [Bacillus pumilus strain PDSLzg-1]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAAATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTCGGTCAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGGAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTACCCGCTCATATTAAAGGATATTTATACTTAAGAGAAGCGATTTCGATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACAAAAGTGTTGTACCCAGACATCGCGAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGCCATGCAATTGAAGTTGCTTGGAGCAGAGGAAACATCGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCGAAACCAACCAATTCTGAATTTATTGCTATGGTGGCTGATCGTCTGCGCTTAGAGCATAGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888

Multiple sequence alignment