Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BEN31_RS05175 Genome accession   NZ_CP016784
Coordinates   964012..965745 (+) Length   577 a.a.
NCBI ID   WP_060596818.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 959012..970745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS05150 (BEN31_05150) - 959323..959583 (+) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -
  BEN31_RS05155 (BEN31_05155) - 959567..960463 (+) 897 WP_249117033.1 polyprenyl synthetase family protein -
  BEN31_RS05160 (BEN31_05160) dxs 960614..962515 (+) 1902 WP_060596820.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BEN31_RS05165 (BEN31_05165) - 962512..963366 (+) 855 WP_066030678.1 TlyA family RNA methyltransferase -
  BEN31_RS05170 (BEN31_05170) ahrC 963529..963978 (+) 450 WP_034661246.1 transcriptional regulator AhrC/ArgR -
  BEN31_RS05175 (BEN31_05175) recN 964012..965745 (+) 1734 WP_060596818.1 DNA repair protein RecN Machinery gene
  BEN31_RS05180 (BEN31_05180) spoIVB 965944..967221 (+) 1278 WP_034661244.1 SpoIVB peptidase -
  BEN31_RS05185 (BEN31_05185) spo0A 967507..968310 (+) 804 WP_066030679.1 sporulation transcription factor Spo0A Regulator
  BEN31_RS05195 (BEN31_05195) - 968767..969867 (+) 1101 WP_066030680.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64717.48 Da        Isoelectric Point: 4.7788

>NTDB_id=192172 BEN31_RS05175 WP_060596818.1 964012..965745(+) (recN) [Bacillus pumilus strain PDSLzg-1]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFSI
RYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=192172 BEN31_RS05175 WP_060596818.1 964012..965745(+) (recN) [Bacillus pumilus strain PDSLzg-1]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCTGGAAAATCCATCATGATTGACGCAGTCTCACTTCTTGTAGGAGGGAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAAAAAAAGGCAGAGCTGGAGGGGCTTTTTCTTGTGCCAGCCGATCACCCTGTATTTGCTTTATGC
GAAGAGCAGGGAATTGACGCATCGGATGAAATGATGATTCTTCGCCGTGATATTAACAATAACGGAAAAAGCATCTGCCG
CATCAATGGCAAACTTGTCACGATCTCACTTTTACGCGAGGTAGGACGCCTTTTGCTCGATATACATGGGCAGCACGATA
ACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTGTCA
CAATATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAAGAGATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTTCAAAACGCATATAATGCCTTGCGCAATGAG
CAGGGAGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTCGAGCAGGTTTCTGAGATCAACGACGATCTGAAAAAGCT
ATCCGAACAAGTGTCGAACTCCTATTACTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGTTGGATCAATTAGAGT
TCGACCCAGCACGTCTTGATTTTATTGAATCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATATGGGACAACGGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATAGAAGAAGAAATAGATCAAATTCAAAATCGAGACAGCCACCTGCAGACGCT
TAAAAACAAACTGGATGCAATGAGCCGTGATGCCCTGCTTGAAGCACTTAACGTTTCAGAGCTTCGTAAAAAATGGGCGA
AAAAACTAGCGAAGCAAATTCAAACAGAACTAAAAGATTTGTATATGGAGAAGTCAACGTTTGATACATCCTTTTCCATT
CGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATCGACCA
AGCTCAATTTGTGATCTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCCTCGGGTGGAGAAATTTCAC
GTGTCATGCTCGCCGTGAAAAGTATTTTCTCAGCCAAACAAGAAGTCACGTCCATTATTTTCGATGAGGTGGATACGGGC
GTAAGCGGCAGAGTGGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTACGCA
CCTCCCGCAAGTAGCAGCAATGGCTGACACGCATCTCTTCATTTCTAAACGCTCTAAAGCCGGCAGAACACTGACAAGCG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAGCTGACAAAA
CAGCACGCAAAAGAATTGCTTCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.39

100

0.754

Multiple sequence alignment