Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CA927_RS06160 Genome accession   NZ_CP021279
Coordinates   1361758..1362357 (+) Length   199 a.a.
NCBI ID   WP_027226815.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain F-4198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1356758..1367357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA927_RS06135 - 1357104..1357844 (+) 741 WP_032830130.1 peptidoglycan DD-metalloendopeptidase family protein -
  CA927_RS06140 rpoS 1357930..1358955 (+) 1026 WP_027226811.1 RNA polymerase sigma factor RpoS Regulator
  CA927_RS06145 hmgA 1359098..1360348 (-) 1251 WP_027226812.1 homogentisate 1,2-dioxygenase -
  CA927_RS06150 - 1360494..1361237 (+) 744 WP_027226813.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CA927_RS06155 ruvC 1361237..1361761 (+) 525 WP_027226814.1 crossover junction endodeoxyribonuclease RuvC -
  CA927_RS06160 ruvA 1361758..1362357 (+) 600 WP_027226815.1 Holliday junction branch migration protein RuvA Machinery gene
  CA927_RS06165 - 1362416..1362736 (+) 321 WP_027226816.1 hypothetical protein -
  CA927_RS06170 lem8 1362814..1364373 (-) 1560 WP_027226817.1 Dot/Icm T4SS effector Lem8 -
  CA927_RS06175 - 1364662..1366077 (-) 1416 WP_027226818.1 ATP-binding protein -
  CA927_RS06180 ciaR 1366074..1366751 (-) 678 WP_011213604.1 response regulator Regulator
  CA927_RS06185 - 1366812..1367357 (-) 546 WP_027221489.1 septation protein A -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22074.29 Da        Isoelectric Point: 6.4932

>NTDB_id=192148 CA927_RS06160 WP_027226815.1 1361758..1362357(+) (ruvA) [Legionella pneumophila subsp. fraseri strain F-4198]
MIGWLHGQIVDRHQPGKLVLDVNGVGYDVETSLNTFFQIENDNQSVGLHIHTIVREDALLLYGFLDKEERSLFRALIKVN
GVGPKLAMAILSSISPKEFIQCIHQENAALLTKLPGIGKKTAERLVIEMRDSIKQFDGSVSDTLQKQAGSAHSQEEAISA
LEALGYKPQEAWKVVNKIDNGNKSCEQLIREALQILSSR

Nucleotide


Download         Length: 600 bp        

>NTDB_id=192148 CA927_RS06160 WP_027226815.1 1361758..1362357(+) (ruvA) [Legionella pneumophila subsp. fraseri strain F-4198]
ATGATAGGTTGGCTCCATGGTCAAATTGTAGATAGGCATCAGCCAGGAAAATTGGTTCTTGATGTCAATGGAGTGGGGTA
TGATGTAGAAACCTCTTTGAATACTTTTTTTCAGATAGAAAATGATAATCAATCGGTTGGATTACATATTCACACGATAG
TTCGAGAAGATGCCTTGTTATTGTATGGCTTCCTGGATAAAGAGGAGCGTTCTTTATTCAGAGCATTAATTAAAGTGAAT
GGGGTAGGCCCCAAACTGGCTATGGCTATTTTATCCAGTATTTCTCCTAAGGAATTTATTCAGTGCATTCACCAGGAAAA
CGCTGCTTTGTTAACCAAGCTACCTGGTATAGGTAAGAAAACTGCAGAACGATTAGTAATCGAGATGAGAGACAGTATAA
AGCAATTTGATGGTTCGGTTTCTGATACTCTCCAAAAACAGGCAGGTAGTGCTCATAGTCAAGAAGAAGCGATTAGCGCG
TTGGAAGCATTAGGTTATAAGCCACAAGAGGCTTGGAAAGTTGTGAATAAAATTGATAATGGTAATAAGAGTTGTGAGCA
GTTGATTCGTGAGGCTTTGCAAATTCTTTCTTCGCGATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(73-131)

RuvA N terminal domain (RuvA_N)

(1-63)

RuvA, C-terminal domain (RuvA_C)

(154-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.784

100

0.367