Detailed information NTG0192147

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA927_RS06140
• Genome accession: NZ_CP021279
• Coordinates: 1357930..1358955 (+)
• Length: 341 a.a.
• NCBI ID: WP_027226811.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. fraseri strain F-4198
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1352930..1363955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA927_RS06110	-	1353361..1353678 (+)	318	WP_027226805.1	DUF2845 domain-containing protein	-
CA927_RS06115	-	1353714..1354085 (+)	372	WP_027226806.1	protease inhibitor I42 family protein	-
CA927_RS06120	-	1354140..1355858 (-)	1719	WP_027226807.1	NAD-dependent malic enzyme	-
CA927_RS06125	-	1355938..1356321 (+)	384	WP_027226808.1	hypothetical protein	-
CA927_RS06130	surE	1356324..1357082 (+)	759	WP_027226809.1	5'/3'-nucleotidase SurE	-
CA927_RS06135	-	1357104..1357844 (+)	741	WP_032830130.1	peptidoglycan DD-metalloendopeptidase family protein	-
CA927_RS06140	rpoS	1357930..1358955 (+)	1026	WP_027226811.1	RNA polymerase sigma factor RpoS	Regulator
CA927_RS06145	hmgA	1359098..1360348 (-)	1251	WP_027226812.1	homogentisate 1,2-dioxygenase	-
CA927_RS06150	-	1360494..1361237 (+)	744	WP_027226813.1	YebC/PmpR family DNA-binding transcriptional regulator	-
CA927_RS06155	ruvC	1361237..1361761 (+)	525	WP_027226814.1	crossover junction endodeoxyribonuclease RuvC	-
CA927_RS06160	ruvA	1361758..1362357 (+)	600	WP_027226815.1	Holliday junction branch migration protein RuvA	Machinery gene
CA927_RS06165	-	1362416..1362736 (+)	321	WP_027226816.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39479.78 Da
• Isoelectric Point: 4.3759

>NTDB_id=192147 CA927_RS06140 WP_027226811.1 1357930..1358955(+) (rpoS) [Legionella pneumophila subsp. fraseri strain F-4198]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEELDEFPEFIDEEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=192147 CA927_RS06140 WP_027226811.1 1357930..1358955(+) (rpoS) [Legionella pneumophila subsp. fraseri strain F-4198]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAAGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGATTCTTTGCT
GTCAGAAGAAGATGTTGAACCAGATATCGAAAAAATGGAAGAAGAGCTTGATGAGTTTCCAGAGTTTATTGATGAGGAAG
CTTTTCCTTCATTCCAACGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACCTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACAGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTGAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAACTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTTGATCTAATCG
AAGAGGGAAATCTGGGTTTAATGAAATCTGTTGAGAAATTTGATCCCAAGCGAGGGTTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACCATAGAACGTGCCATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTGGTGAAAGA
ACTCAATGTTTATCTTAGAGCAGCAAGACAATTAACGCAAAAACTGGATCATGAACCATCTCCTGAAGAAATAGCAGAAA
TGGTTGATAAGCCTTTGGAGGATGTTCAAAAACTATTGGGCTTGAATGATAAAGTCGCTTCAGTTGATACCCCAATTGGA
TTTGATGAAACCAAATCTTTATTGGATACGATTGCTGATGAAAACAGTTTAAATCCTGCAGAACTATTAACCAATGAGAA
TTTAAGGCAACATATAGAATCTCTTTTGGATAAATTAACTGAGAATCAACAACAGGTTATCGCAAGACGCTTTGGGTTAA
GAGGTTTTGAAAAAGCAACACTTGAGGATGTTGGTAAGGAAATTGATTTGACTCGTGAACGCGTTCGCCAGATTCAGGTT
GAAGCTTTGAAGACGCTAAGAACCTTGTTGGAGCGGGTTGGATTAACGCAAGAGGATTTGTTTTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548