Detailed information NTG0192094

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA929_RS08295
• Genome accession: NZ_CP021277
• Coordinates: 1798585..1799610 (-)
• Length: 341 a.a.
• NCBI ID: WP_027226811.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. fraseri strain D-4058
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1793585..1804610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA929_RS08270	-	1794804..1795124 (-)	321	WP_027226816.1	hypothetical protein	-
CA929_RS08275	ruvA	1795183..1795782 (-)	600	WP_027226815.1	Holliday junction branch migration protein RuvA	Machinery gene
CA929_RS08280	ruvC	1795779..1796303 (-)	525	WP_027226814.1	crossover junction endodeoxyribonuclease RuvC	-
CA929_RS08285	-	1796303..1797046 (-)	744	WP_027226813.1	YebC/PmpR family DNA-binding transcriptional regulator	-
CA929_RS08290	hmgA	1797192..1798442 (+)	1251	WP_027226812.1	homogentisate 1,2-dioxygenase	-
CA929_RS08295	rpoS	1798585..1799610 (-)	1026	WP_027226811.1	RNA polymerase sigma factor RpoS	Regulator
CA929_RS08300	-	1799696..1800436 (-)	741	WP_032830130.1	peptidoglycan DD-metalloendopeptidase family protein	-
CA929_RS08305	surE	1800458..1801216 (-)	759	WP_027226809.1	5'/3'-nucleotidase SurE	-
CA929_RS08310	-	1801219..1801602 (-)	384	WP_027226808.1	hypothetical protein	-
CA929_RS08315	-	1801682..1803400 (+)	1719	WP_027226807.1	NAD-dependent malic enzyme	-
CA929_RS08320	-	1803455..1803826 (-)	372	WP_027226806.1	protease inhibitor I42 family protein	-
CA929_RS08325	-	1803862..1804179 (-)	318	WP_027226805.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39479.78 Da
• Isoelectric Point: 4.3759

>NTDB_id=192094 CA929_RS08295 WP_027226811.1 1798585..1799610(-) (rpoS) [Legionella pneumophila subsp. fraseri strain D-4058]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEELDEFPEFIDEEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=192094 CA929_RS08295 WP_027226811.1 1798585..1799610(-) (rpoS) [Legionella pneumophila subsp. fraseri strain D-4058]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAAGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGATTCTTTGCT
GTCAGAAGAAGATGTTGAACCAGATATCGAAAAAATGGAAGAAGAGCTTGATGAGTTTCCAGAGTTTATTGATGAGGAAG
CTTTTCCTTCATTCCAACGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACCTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACAGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTGAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAACTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTTGATCTAATCG
AAGAGGGAAATCTGGGTTTAATGAAATCTGTTGAGAAATTTGATCCCAAGCGAGGGTTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACCATAGAACGTGCCATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTGGTGAAAGA
ACTCAATGTTTATCTTAGAGCAGCAAGACAATTAACGCAAAAACTGGATCATGAACCATCTCCTGAAGAAATAGCAGAAA
TGGTTGATAAGCCTTTGGAGGATGTTCAAAAACTATTGGGCTTGAATGATAAAGTCGCTTCAGTTGATACCCCAATTGGA
TTTGATGAAACCAAATCTTTATTGGATACGATTGCTGATGAAAACAGTTTAAATCCTGCAGAACTATTAACCAATGAGAA
TTTAAGGCAACATATAGAATCTCTTTTGGATAAATTAACTGAGAATCAACAACAGGTTATCGCAAGACGCTTTGGGTTAA
GAGGTTTTGAAAAAGCAACACTTGAGGATGTTGGTAAGGAAATTGATTTGACTCGTGAACGCGTTCGCCAGATTCAGGTT
GAAGCTTTGAAGACGCTAAGAACCTTGTTGGAGCGGGTTGGATTAACGCAAGAGGATTTGTTTTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548