Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CA929_RS08275 Genome accession   NZ_CP021277
Coordinates   1795183..1795782 (-) Length   199 a.a.
NCBI ID   WP_027226815.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-4058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1790183..1800782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA929_RS08250 - 1790183..1790728 (+) 546 WP_027221489.1 septation protein A -
  CA929_RS08255 ciaR 1790789..1791466 (+) 678 WP_011213604.1 response regulator Regulator
  CA929_RS08260 - 1791463..1792878 (+) 1416 WP_027226818.1 ATP-binding protein -
  CA929_RS08265 lem8 1793167..1794726 (+) 1560 WP_027226817.1 Dot/Icm T4SS effector Lem8 -
  CA929_RS08270 - 1794804..1795124 (-) 321 WP_027226816.1 hypothetical protein -
  CA929_RS08275 ruvA 1795183..1795782 (-) 600 WP_027226815.1 Holliday junction branch migration protein RuvA Machinery gene
  CA929_RS08280 ruvC 1795779..1796303 (-) 525 WP_027226814.1 crossover junction endodeoxyribonuclease RuvC -
  CA929_RS08285 - 1796303..1797046 (-) 744 WP_027226813.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CA929_RS08290 hmgA 1797192..1798442 (+) 1251 WP_027226812.1 homogentisate 1,2-dioxygenase -
  CA929_RS08295 rpoS 1798585..1799610 (-) 1026 WP_027226811.1 RNA polymerase sigma factor RpoS Regulator
  CA929_RS08300 - 1799696..1800436 (-) 741 WP_032830130.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22074.29 Da        Isoelectric Point: 6.4932

>NTDB_id=192093 CA929_RS08275 WP_027226815.1 1795183..1795782(-) (ruvA) [Legionella pneumophila subsp. fraseri strain D-4058]
MIGWLHGQIVDRHQPGKLVLDVNGVGYDVETSLNTFFQIENDNQSVGLHIHTIVREDALLLYGFLDKEERSLFRALIKVN
GVGPKLAMAILSSISPKEFIQCIHQENAALLTKLPGIGKKTAERLVIEMRDSIKQFDGSVSDTLQKQAGSAHSQEEAISA
LEALGYKPQEAWKVVNKIDNGNKSCEQLIREALQILSSR

Nucleotide


Download         Length: 600 bp        

>NTDB_id=192093 CA929_RS08275 WP_027226815.1 1795183..1795782(-) (ruvA) [Legionella pneumophila subsp. fraseri strain D-4058]
ATGATAGGTTGGCTCCATGGTCAAATTGTAGATAGGCATCAGCCAGGAAAATTGGTTCTTGATGTCAATGGAGTGGGGTA
TGATGTAGAAACCTCTTTGAATACTTTTTTTCAGATAGAAAATGATAATCAATCGGTTGGATTACATATTCACACGATAG
TTCGAGAAGATGCCTTGTTATTGTATGGCTTCCTGGATAAAGAGGAGCGTTCTTTATTCAGAGCATTAATTAAAGTGAAT
GGGGTAGGCCCCAAACTGGCTATGGCTATTTTATCCAGTATTTCTCCTAAGGAATTTATTCAGTGCATTCACCAGGAAAA
CGCTGCTTTGTTAACCAAGCTACCTGGTATAGGTAAGAAAACTGCAGAACGATTAGTAATCGAGATGAGAGACAGTATAA
AGCAATTTGATGGTTCGGTTTCTGATACTCTCCAAAAACAGGCAGGTAGTGCTCATAGTCAAGAAGAAGCGATTAGCGCG
TTGGAAGCATTAGGTTATAAGCCACAAGAGGCTTGGAAAGTTGTGAATAAAATTGATAATGGTAATAAGAGTTGTGAGCA
GTTGATTCGTGAGGCTTTGCAAATTCTTTCTTCGCGATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(73-131)

RuvA N terminal domain (RuvA_N)

(1-63)

RuvA, C-terminal domain (RuvA_C)

(154-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.784

100

0.367