Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BEN83_RS20430 | Genome accession | NZ_CP016766 |
| Coordinates | 1844638..1845174 (-) | Length | 178 a.a. |
| NCBI ID | WP_050611466.1 | Uniprot ID | A0A231QZ19 |
| Organism | Ligilactobacillus agilis strain La3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1839638..1850174
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BEN83_RS20410 (BEN83_09220) | - | 1839802..1840914 (-) | 1113 | WP_094130894.1 | PTS transporter subunit IIC | - |
| BEN83_RS20415 (BEN83_09225) | - | 1841265..1842425 (-) | 1161 | WP_094130895.1 | CynX/NimT family MFS transporter | - |
| BEN83_RS20420 (BEN83_09230) | - | 1842661..1844121 (-) | 1461 | WP_094130897.1 | MFS transporter | - |
| BEN83_RS20425 (BEN83_09235) | rpsR | 1844381..1844617 (-) | 237 | WP_006500881.1 | 30S ribosomal protein S18 | - |
| BEN83_RS20430 (BEN83_09240) | ssb | 1844638..1845174 (-) | 537 | WP_050611466.1 | single-stranded DNA-binding protein | Machinery gene |
| BEN83_RS20435 (BEN83_09245) | rpsF | 1845224..1845514 (-) | 291 | WP_050611467.1 | 30S ribosomal protein S6 | - |
| BEN83_RS20440 (BEN83_09250) | gyrA | 1845697..1848165 (-) | 2469 | WP_056975565.1 | DNA gyrase subunit A | - |
| BEN83_RS20445 (BEN83_09255) | gyrB | 1848184..1850070 (-) | 1887 | WP_404899924.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19415.08 Da Isoelectric Point: 4.5296
>NTDB_id=192032 BEN83_RS20430 WP_050611466.1 1844638..1845174(-) (ssb) [Ligilactobacillus agilis strain La3]
MINNVVLVGRLTRDPDLRFTPSGVATANFTLAVDRNFTNQQGQRDADFINCVVWRKAAENFANYTHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVSNFSFLESKAQADAYRQQNGGGQGYAPQGQGYQANPYGTPAANQAQPGGFTNNNTSEAQPSAD
PFADNGDTIDIADNDLPF
MINNVVLVGRLTRDPDLRFTPSGVATANFTLAVDRNFTNQQGQRDADFINCVVWRKAAENFANYTHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVSNFSFLESKAQADAYRQQNGGGQGYAPQGQGYQANPYGTPAANQAQPGGFTNNNTSEAQPSAD
PFADNGDTIDIADNDLPF
Nucleotide
Download Length: 537 bp
>NTDB_id=192032 BEN83_RS20430 WP_050611466.1 1844638..1845174(-) (ssb) [Ligilactobacillus agilis strain La3]
TTGATTAATAATGTCGTACTTGTAGGTCGCCTGACCAGAGATCCTGATTTACGGTTCACCCCCTCTGGTGTTGCAACTGC
TAACTTTACGTTGGCGGTTGACCGCAACTTTACTAACCAACAAGGTCAAAGAGATGCAGATTTTATTAACTGTGTCGTTT
GGCGTAAGGCTGCGGAAAACTTTGCTAACTATACCCACAAAGGTTCTTTAGTTGGAATCGAAGGCCGGATTCAAACACGG
AATTACGAAAACCAACAAGGCCAACGGGTGTACGTTACAGAAGTGGTGGTATCAAACTTCAGCTTCCTCGAATCTAAGGC
ACAAGCCGATGCTTACCGGCAACAAAACGGCGGTGGTCAAGGTTATGCTCCACAAGGTCAAGGCTATCAAGCTAACCCAT
ACGGGACACCAGCTGCAAACCAAGCGCAACCAGGTGGCTTTACTAACAACAATACTAGTGAAGCACAACCAAGTGCGGAT
CCATTTGCAGATAACGGTGATACGATTGATATCGCGGATAATGACCTACCATTCTAG
TTGATTAATAATGTCGTACTTGTAGGTCGCCTGACCAGAGATCCTGATTTACGGTTCACCCCCTCTGGTGTTGCAACTGC
TAACTTTACGTTGGCGGTTGACCGCAACTTTACTAACCAACAAGGTCAAAGAGATGCAGATTTTATTAACTGTGTCGTTT
GGCGTAAGGCTGCGGAAAACTTTGCTAACTATACCCACAAAGGTTCTTTAGTTGGAATCGAAGGCCGGATTCAAACACGG
AATTACGAAAACCAACAAGGCCAACGGGTGTACGTTACAGAAGTGGTGGTATCAAACTTCAGCTTCCTCGAATCTAAGGC
ACAAGCCGATGCTTACCGGCAACAAAACGGCGGTGGTCAAGGTTATGCTCCACAAGGTCAAGGCTATCAAGCTAACCCAT
ACGGGACACCAGCTGCAAACCAAGCGCAACCAGGTGGCTTTACTAACAACAATACTAGTGAAGCACAACCAAGTGCGGAT
CCATTTGCAGATAACGGTGATACGATTGATATCGCGGATAATGACCTACCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.777 |
100 |
0.601 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.889 |
100 |
0.545 |