Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BEN83_RS11620 Genome accession   NZ_CP016766
Coordinates   110285..111661 (+) Length   458 a.a.
NCBI ID   WP_056975644.1    Uniprot ID   A0A226RJJ7
Organism   Ligilactobacillus agilis strain La3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105285..116661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN83_RS11585 (BEN83_00535) - 105319..105912 (-) 594 WP_094127657.1 histidine phosphatase family protein -
  BEN83_RS11590 (BEN83_00540) - 105905..106753 (-) 849 WP_094127660.1 HAD family hydrolase -
  BEN83_RS11595 - 106859..107176 (+) 318 WP_225427513.1 VOC family protein -
  BEN83_RS11600 (BEN83_00550) - 107195..108529 (-) 1335 WP_089144269.1 C1 family peptidase -
  BEN83_RS11605 (BEN83_00555) rpiA 108596..109279 (-) 684 WP_056975652.1 ribose-5-phosphate isomerase RpiA -
  BEN83_RS11610 (BEN83_00560) - 109332..109607 (-) 276 WP_056975650.1 GNAT family N-acetyltransferase -
  BEN83_RS11615 (BEN83_00565) - 109734..110270 (+) 537 WP_094127666.1 dUTP diphosphatase -
  BEN83_RS11620 (BEN83_00570) radA 110285..111661 (+) 1377 WP_056975644.1 DNA repair protein RadA Machinery gene
  BEN83_RS11625 (BEN83_00575) - 111693..112817 (+) 1125 WP_050611738.1 PIN/TRAM domain-containing protein -
  BEN83_RS11630 (BEN83_00580) - 113290..115014 (-) 1725 WP_094127668.1 methyl-accepting chemotaxis protein -
  BEN83_RS11635 - 115408..115626 (-) 219 WP_094127671.1 IS3 family transposase -
  BEN83_RS22555 - 115643..115915 (-) 273 WP_418766078.1 DDE-type integrase/transposase/recombinase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49455.85 Da        Isoelectric Point: 6.8556

>NTDB_id=192016 BEN83_RS11620 WP_056975644.1 110285..111661(+) (radA) [Ligilactobacillus agilis strain La3]
MAKTKTKYVCQECGYSSPRYLGRCPNCGAWNSLVEEIEEKTSPKAAANARVTISGTKVSPQLIEQVSIEKTPRIKTNLKE
LNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLADLKSRVLYVSGEESASQIKMRADRLGVGGSEFYLYPETDMGAV
RQSISDLKPDYVIIDSVQTMQEPEMTSAVGSVAQIREVTADLMQLAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLY
FEGDKQRTFRILRAVKNRFGSTNEIGIFEMREGGLYEVANPSEIFLEERLQGATGSAVVASLEGTRPILVELQALVTPTA
FGNAKRTTTGLDHNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDKETRASDCFIGELGL
TGEVRTVTRIEQRVAEAAKLGFKRVIVPKNNLDGWDFPAGIQVLGVTTLNEALHIAFD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=192016 BEN83_RS11620 WP_056975644.1 110285..111661(+) (radA) [Ligilactobacillus agilis strain La3]
GTGGCGAAAACCAAAACAAAGTATGTCTGCCAGGAATGTGGTTACAGCTCCCCACGGTATTTGGGCCGCTGTCCTAACTG
TGGAGCCTGGAACAGCCTGGTAGAAGAAATCGAAGAAAAGACTAGTCCCAAGGCAGCTGCGAATGCGCGGGTGACCATCA
GTGGTACCAAGGTTAGCCCGCAATTAATCGAGCAAGTTAGCATTGAAAAAACACCCCGCATCAAAACCAACCTAAAAGAA
CTAAACCGGGTGTTAGGCGGGGGGATTGTCCCTGGCTCCTTGGTTTTGATTGGGGGGGATCCGGGAATTGGTAAATCCAC
CCTATTATTGCAGGTTTCGGGTCAATTAGCTGACTTAAAGAGTCGGGTCTTATACGTTTCTGGTGAAGAAAGTGCCAGTC
AAATTAAGATGCGGGCGGACCGGCTAGGGGTTGGCGGTAGCGAATTTTACCTCTACCCCGAAACAGATATGGGGGCGGTT
CGTCAAAGCATCAGTGATTTGAAACCAGATTATGTCATTATTGACTCGGTTCAAACCATGCAAGAACCGGAAATGACTTC
GGCTGTCGGCAGCGTTGCCCAAATTAGGGAAGTAACCGCCGATTTGATGCAGTTAGCCAAGACCAACGGCATTACCATCT
TCATTGTTGGCCACGTAACTAAGGGGGGCGCCATTGCTGGGCCCAAGATCTTAGAGCACATGGTTGATACCGTCCTTTAT
TTTGAAGGGGATAAGCAAAGGACCTTTCGGATTTTGCGGGCCGTCAAAAACCGCTTTGGCTCCACCAATGAAATTGGGAT
TTTTGAGATGCGGGAAGGGGGCTTATATGAGGTCGCTAACCCGTCAGAAATCTTTTTGGAAGAACGGCTGCAAGGTGCAA
CCGGGTCGGCAGTGGTGGCTTCACTTGAAGGAACCCGCCCAATTTTGGTTGAACTCCAAGCCCTGGTAACCCCAACTGCC
TTTGGGAATGCTAAGCGGACCACGACCGGGCTTGACCATAACCGGGTTTCATTGATTATGGCCGTTTTAGAAAAGCGGGC
CGGCTTGTTATTACAAAATCAGGATGCCTACCTAAAGGCCGCGGGGGGCGTTAAGCTAGACGAACCTGCGATTGACTTAG
CGATTGCAGTTAGTTTGGTGTCCTCTTACCGGGATAAGGAAACCCGGGCGAGCGACTGCTTTATCGGTGAGTTAGGCTTA
ACTGGTGAGGTCCGGACGGTAACAAGGATTGAACAACGGGTGGCAGAAGCCGCTAAGCTAGGTTTTAAGCGGGTAATCGT
TCCTAAAAATAACCTAGACGGTTGGGACTTTCCGGCTGGCATCCAGGTTTTAGGGGTGACGACTTTAAACGAAGCGCTCC
ACATTGCCTTTGACTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-223)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A226RJJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

68.053

99.782

0.679
  radA Streptococcus pneumoniae D39

68.053

99.782

0.679
  radA Streptococcus pneumoniae R6

68.053

99.782

0.679
  radA Streptococcus pneumoniae TIGR4

68.053

99.782

0.679
  radA Streptococcus mitis SK321

68.053

99.782

0.679
  radA Streptococcus mitis NCTC 12261

68.053

99.782

0.679
  radA Bacillus subtilis subsp. subtilis str. 168

64.565

100

0.648

Multiple sequence alignment