Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   BEK99_RS13545 Genome accession   NZ_CP016760
Coordinates   1098956..1099315 (+) Length   119 a.a.
NCBI ID   WP_237340566.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1093956..1104315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEK99_RS05490 (BEK99_05490) - 1095085..1095285 (+) 201 WP_015900419.1 YqgQ family protein -
  BEK99_RS05495 (BEK99_05495) - 1095285..1096271 (+) 987 WP_015900418.1 ROK family glucokinase -
  BEK99_RS05500 (BEK99_05500) - 1096271..1096600 (+) 330 WP_015900417.1 MTH1187 family thiamine-binding protein -
  BEK99_RS05505 (BEK99_05505) - 1096600..1097223 (+) 624 WP_015900416.1 MBL fold metallo-hydrolase -
  BEK99_RS05510 (BEK99_05510) comGA 1097294..1098286 (+) 993 WP_065865449.1 competence type IV pilus ATPase ComGA Machinery gene
  BEK99_RS13540 - 1098240..1098605 (+) 366 WP_237340565.1 hypothetical protein -
  BEK99_RS13545 comGB 1098956..1099315 (+) 360 WP_237340566.1 type II secretion system F family protein Machinery gene
  BEK99_RS05520 (BEK99_05520) comGC 1099333..1099659 (+) 327 WP_015900413.1 competence type IV pilus major pilin ComGC Machinery gene
  BEK99_RS05525 (BEK99_05525) comGD 1099637..1100092 (+) 456 WP_041612978.1 competence type IV pilus minor pilin ComGD -
  BEK99_RS05530 (BEK99_05530) - 1100073..1100369 (+) 297 WP_041612977.1 hypothetical protein -
  BEK99_RS05535 (BEK99_05535) comGF 1100326..1100784 (+) 459 WP_158297486.1 competence type IV pilus minor pilin ComGF -
  BEK99_RS05540 (BEK99_05540) - 1100955..1101494 (+) 540 WP_046099279.1 shikimate kinase -
  BEK99_RS05545 (BEK99_05545) gcvT 1101685..1102780 (+) 1096 Protein_1082 glycine cleavage system aminomethyltransferase GcvT -
  BEK99_RS05550 (BEK99_05550) gcvPA 1102801..1104148 (+) 1348 Protein_1083 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13781.56 Da        Isoelectric Point: 4.7388

>NTDB_id=191950 BEK99_RS13545 WP_237340566.1 1098956..1099315(+) (comGB) [Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069]
MLQQISKIYINQSVDPFLKYIGEFTIQNIENGLSLPEIFKKIGCFQNELIQFIEQGEKSGNLEIELNIYAQILLSQIEAK
MNKQIKLIQPIIFLLLGLLIVSLYLIIMLPMFDMMQSIK

Nucleotide


Download         Length: 360 bp        

>NTDB_id=191950 BEK99_RS13545 WP_237340566.1 1098956..1099315(+) (comGB) [Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069]
ATGCTACAGCAAATTTCAAAAATTTATATCAATCAAAGTGTTGATCCTTTTCTTAAATATATAGGTGAATTCACAATTCA
AAATATAGAAAATGGATTGAGTCTGCCAGAAATTTTTAAAAAGATAGGCTGTTTTCAAAACGAGCTTATTCAATTCATTG
AGCAAGGTGAAAAAAGCGGAAACCTTGAAATAGAACTAAATATTTATGCCCAGATTTTATTAAGTCAAATTGAAGCTAAA
ATGAATAAACAAATCAAGTTAATTCAACCAATAATATTTTTATTATTAGGATTGCTTATTGTTTCCCTTTATCTAATTAT
TATGTTGCCTATGTTCGATATGATGCAATCCATTAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(12-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

55.085

99.16

0.546
  comGB Staphylococcus aureus N315

55.085

99.16

0.546

Multiple sequence alignment