Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilC   Type   Machinery gene
Locus tag   QP84_RS14635 Genome accession   NZ_CP016684
Coordinates   1206053..1206175 (-) Length   40 a.a.
NCBI ID   WP_306807940.1    Uniprot ID   -
Organism   Neisseria meningitidis strain L91543     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1201053..1211175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP84_RS06200 (QP84_006200) pilC 1203060..1206056 (-) 2997 WP_065818661.1 PilC family type IV pilus tip adhesin Machinery gene
  QP84_RS14635 pilC 1206053..1206175 (-) 123 WP_306807940.1 hypothetical protein Machinery gene
  QP84_RS06205 (QP84_006205) apbC 1207129..1208208 (-) 1080 WP_042745125.1 iron-sulfur cluster carrier protein ApbC -
  QP84_RS06215 (QP84_006215) - 1208573..1209082 (+) 510 WP_002240006.1 protein disulfide oxidoreductase -
  QP84_RS06225 (QP84_006225) nadR 1209425..1209865 (+) 441 WP_002221507.1 MarR family adhesin repressor NadR -
  QP84_RS06230 (QP84_006230) hpaC 1209980..1210480 (+) 501 WP_021439402.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence


Protein


Download         Length: 40 a.a.        Molecular weight: 4556.43 Da        Isoelectric Point: 12.8111

>NTDB_id=191838 QP84_RS14635 WP_306807940.1 1206053..1206175(-) (pilC) [Neisseria meningitidis strain L91543]
MNKTLKRRVFRHTALYAAILMFSHTGGGGRRRKPVNTLLS

Nucleotide


Download         Length: 123 bp        

>NTDB_id=191838 QP84_RS14635 WP_306807940.1 1206053..1206175(-) (pilC) [Neisseria meningitidis strain L91543]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGCGCAGGCGCAAACCCGTCAATACGCTATTATCATGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

96.552

72.5

0.7


Multiple sequence alignment