Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QP84_RS06200 Genome accession   NZ_CP016684
Coordinates   1203060..1206056 (-) Length   998 a.a.
NCBI ID   WP_065818661.1    Uniprot ID   -
Organism   Neisseria meningitidis strain L91543     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1198060..1211056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP84_RS13525 - 1198671..1198838 (-) 168 WP_153312129.1 hypothetical protein -
  QP84_RS06165 (QP84_006165) - 1198842..1199231 (-) 390 WP_002221514.1 endonuclease domain-containing protein -
  QP84_RS06180 (QP84_006180) - 1199811..1199948 (-) 138 WP_002214606.1 VOC family protein -
  QP84_RS06185 (QP84_006185) carA 1199994..1201127 (-) 1134 WP_002245197.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  QP84_RS06200 (QP84_006200) pilC 1203060..1206056 (-) 2997 WP_065818661.1 PilC family type IV pilus tip adhesin Machinery gene
  QP84_RS14635 pilC 1206053..1206175 (-) 123 WP_306807940.1 hypothetical protein Machinery gene
  QP84_RS06205 (QP84_006205) apbC 1207129..1208208 (-) 1080 WP_042745125.1 iron-sulfur cluster carrier protein ApbC -
  QP84_RS06215 (QP84_006215) - 1208573..1209082 (+) 510 WP_002240006.1 protein disulfide oxidoreductase -
  QP84_RS06225 (QP84_006225) nadR 1209425..1209865 (+) 441 WP_002221507.1 MarR family adhesin repressor NadR -
  QP84_RS06230 (QP84_006230) hpaC 1209980..1210480 (+) 501 WP_021439402.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 998 a.a.        Molecular weight: 109626.66 Da        Isoelectric Point: 9.6465

>NTDB_id=191817 QP84_RS06200 WP_065818661.1 1203060..1206056(-) (pilC) [Neisseria meningitidis strain L91543]
MNEGNQPEVQWNGSYSIKDKDRKREYTHHNHSRGGSSVSFNNSDELVSQQSGTAVFGTATYLPPYGKVSGFDADGLNKRG
NAAGWIRTTRIALAGYSYEGVVCRSGTGCPKLVYKTRFSFDNPDLVKNAGRLDRHTDPSRENSPIYKLKDYPWLGVSFNL
GAEGTTKDGKTINKLVSSFDEKNSSNNNLVYTTEGRDISLGDWQREKTAMAYYLNAKLHLLDKKGIKDITNKTVQLGVLR
PSIDVRLQRNTGLAGLLNFWASWDIKDNGQIPVKLGLQQVKADRCINKQNPNPKSKAPSPALTAPALWFGPVQNGKAQMY
SASVSTYPDSSSSRIFLQNLKRKDDPNKPGRHSLATLTENDIKNREPTFNQRQTIIRLDGGVQQIKLDKSNEATGLNGNT
NNNTFGIVKDLGVDPDANEWKKVLLPWTVRAFNDDGRFNTVNKEENNGKPKYSQRYRIRENGNNGKRDLGDIVNSPIVAV
GGYLATSANDGMVHIFKQSGGDKRGYNLKLSYIPGTMPRKNIENNDSTLAKELRAFAEKGYVGDRYGVDGGFVLRRITDD
QDKQKHFFMFGAMGFGGRGAYALDLTKADDNDPTKASLFDVKDNGNNGNNGNNRVELGYTVGTPQIGKTHNGKYAAFLAS
GYATKKIDDPTNKTALYVYDLENNNGTPIAKIEVPNGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSNNDPTKW
SVRTIFKGTPDKPITSAPAVSKLKDKRVVIFGTGSDLSEDDVDKKDIQSIYGIFDNDTGTDVAEEGQGKGLLEQHLTQED
KTLFLTDYKRSDGSGDKGWVVKLEAGQRVTVKPTVVLRTAFVTIRKYNDGGCGAETAILGINTADGGKLTKKSARPIVPE
ANTAVAQYSGHKQTAKGKSIPIGCMWKNNETVCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNN
RCFSGKGVRTLLMNDLDSLDITGPTCGMKRISWREIFY

Nucleotide


Download         Length: 2997 bp        

>NTDB_id=191817 QP84_RS06200 WP_065818661.1 1203060..1206056(-) (pilC) [Neisseria meningitidis strain L91543]
ATGAACGAGGGAAACCAGCCCGAGGTACAGTGGAATGGGTCATATTCAATAAAGGACAAAGACAGGAAGCGCGAATATAC
TCATCATAATCACTCACGAGGAGGAAGCTCTGTCTCATTCAACAATAGCGATGAGCTTGTTTCTCAACAAAGCGGTACTG
CCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATGCCGACGGGCTGAACAAGCGCGGC
AATGCCGCCGGTTGGATTCGTACCACCCGCATCGCGCTGGCAGGCTACAGCTACGAAGGTGTCGTATGCAGAAGCGGCAC
AGGCTGTCCCAAACTTGTCTATAAAACCCGATTTTCCTTCGATAATCCCGACTTGGTAAAAAATGCGGGCAGGCTGGATA
GGCACACAGACCCAAGCCGCGAAAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTATCTTTCAATTTG
GGTGCCGAGGGTACCACCAAAGATGGTAAGACAATCAACAAATTGGTATCTTCTTTTGATGAAAAGAATAGTAGTAATAA
CAACCTCGTCTATACCACGGAAGGCCGCGATATTTCCTTGGGCGACTGGCAGCGCGAAAAGACCGCCATGGCCTATTATC
TGAACGCCAAACTGCACCTGCTGGACAAAAAAGGGATTAAAGATATCACCAACAAAACAGTGCAGTTGGGTGTCTTGAGG
CCGAGCATCGATGTGCGGCTGCAAAGAAATACGGGGCTTGCCGGCTTGCTAAATTTTTGGGCTAGTTGGGACATTAAAGA
TAACGGGCAGATTCCGGTCAAGCTCGGCCTGCAGCAAGTCAAAGCAGACCGCTGCATCAACAAACAGAACCCAAATCCCA
AATCCAAAGCCCCTTCCCCCGCCCTGACCGCCCCCGCGCTGTGGTTCGGACCTGTGCAAAATGGTAAGGCGCAGATGTAT
TCCGCTTCGGTTTCTACCTACCCCGACAGTTCGAGCAGCCGCATTTTCCTTCAAAATCTGAAAAGAAAAGACGACCCCAA
CAAACCCGGCCGCCATTCCCTCGCAACCTTGACTGAGAATGATATTAAAAATCGAGAGCCGACTTTCAACCAGCGGCAAA
CAATCATCCGATTGGATGGCGGCGTACAGCAGATCAAACTGGATAAAAGCAATGAGGCCACCGGTTTAAATGGAAATACC
AACAACAACACTTTCGGCATTGTTAAGGACTTGGGCGTCGATCCTGATGCCAATGAGTGGAAAAAAGTATTGCTGCCTTG
GACGGTTCGTGCTTTCAATGATGACGGTCGATTTAACACAGTCAACAAAGAAGAAAACAACGGCAAGCCAAAATACAGCC
AAAGATACCGCATCCGCGAAAACGGCAACAACGGCAAGCGTGATTTGGGCGACATCGTCAACAGCCCCATCGTGGCGGTC
GGCGGGTATTTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAACAAAGCGGCGGGGACAAGCGCGGCTACAA
TCTGAAGCTCAGTTATATCCCGGGTACGATGCCGCGCAAGAATATTGAAAACAACGACTCCACCCTTGCCAAAGAGCTGC
GCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGAC
CAAGACAAGCAAAAACACTTCTTTATGTTCGGCGCAATGGGCTTTGGCGGCAGAGGCGCATACGCCTTGGATTTGACCAA
AGCCGACGACAATGACCCGACAAAAGCCTCTTTGTTTGATGTAAAAGATAACGGCAATAATGGCAATAACGGCAATAATC
GCGTGGAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCACAACGGCAAATACGCCGCTTTCCTCGCCTCC
GGTTATGCGACTAAAAAAATTGACGACCCAACAAATAAAACCGCGCTGTATGTGTATGATTTGGAAAACAACAACGGTAC
GCCGATTGCAAAAATCGAAGTACCCAACGGCAAGGGCGGGCTTTCGTCCCCCACGTTGGTGGATAAAGATTTGGACGGCA
CGGTCGATATCGCCTATGCCGGCGACCGCGGCGGGAATATGTACCGCTTTGATTTGAGCAACAACGATCCGACCAAATGG
TCTGTACGTACTATTTTTAAAGGCACGCCGGATAAGCCGATTACCTCCGCGCCCGCCGTTTCCAAACTGAAAGACAAACG
CGTGGTTATCTTCGGTACGGGCAGTGATTTGAGTGAGGATGATGTTGATAAAAAGGATATACAATCTATTTACGGTATTT
TTGACAATGACACAGGCACGGATGTGGCAGAAGAAGGACAGGGCAAAGGGTTGCTCGAGCAACACCTTACTCAGGAAGAT
AAAACCTTATTCCTGACCGATTACAAGCGATCCGACGGCTCGGGCGACAAGGGCTGGGTAGTGAAATTGGAAGCCGGACA
GCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTAACCATCCGCAAATATAACGACGGCGGCTGCGGCG
CGGAAACCGCCATTTTGGGCATCAATACTGCCGACGGCGGCAAGCTGACCAAGAAAAGCGCGCGCCCGATTGTGCCGGAA
GCCAATACGGCTGTCGCGCAATATTCCGGTCATAAGCAAACCGCCAAAGGCAAATCCATCCCTATAGGTTGTATGTGGAA
AAACAATGAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTATCTGGATGAAAAGAAAACAG
ACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAAC
CGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGACATTACCGGCCCGACGTGCGG
TATGAAACGAATCAGCTGGCGTGAAATCTTCTACTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(469-806)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

75.248

100

0.762

Multiple sequence alignment