Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   CA925_RS11665 Genome accession   NZ_CP021266
Coordinates   2596477..2597829 (-) Length   450 a.a.
NCBI ID   WP_050486549.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Knoxville     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2591477..2602829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA925_RS11650 pilU 2592217..2593338 (-) 1122 WP_027225181.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  CA925_RS11655 - 2593428..2595356 (-) 1929 WP_027225182.1 L-gulono-gamma-lactone oxidase -
  CA925_RS11660 - 2595644..2596480 (-) 837 WP_027225183.1 phytanoyl-CoA dioxygenase family protein -
  CA925_RS11665 radA/sms 2596477..2597829 (-) 1353 WP_050486549.1 DNA repair protein RadA Machinery gene
  CA925_RS11670 - 2598064..2598942 (+) 879 WP_027225184.1 lpg2327 family Dot/Icm T4SS effector -
  CA925_RS11675 - 2599206..2599589 (+) 384 WP_027225185.1 hypothetical protein -
  CA925_RS11680 - 2599783..2600013 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  CA925_RS11685 - 2599994..2600890 (+) 897 WP_027225186.1 polyprenyl synthetase family protein -
  CA925_RS11690 bioC 2600934..2601788 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  CA925_RS11695 comFC 2601946..2602536 (+) 591 WP_027225187.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 48858.44 Da        Isoelectric Point: 7.7495

>NTDB_id=191833 CA925_RS11665 WP_050486549.1 2596477..2597829(-) (radA/sms) [Legionella pneumophila subsp. pneumophila strain Knoxville]
MKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIVPENKTSRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNRV
LGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQAQ
KEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQN
DSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPEPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQAK
RVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDSETIIFGEVGLAGEIR
PVQSGQERIKEAIKHGFKRAIVPFANAPKQQLDSMTVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=191833 CA925_RS11665 WP_050486549.1 2596477..2597829(-) (radA/sms) [Legionella pneumophila subsp. pneumophila strain Knoxville]
ATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCCATTTTTAAACAGTGGGCAGGACAATGCACTCAATGTGG
CGCCTGGAATTCCATTGTTGAAGAAGGGATTGTGCCTGAAAACAAGACTTCACGAAGTGGGCAATGGGCTAATCAGCGCT
CTGTCATCACTGCTGTTGAAGACGTCGTCATGGACAAAATAGTACGTATGGATTGTGGTATATCCGAGCTCAACCGGGTT
TTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGAGATCCGGGGATCGGTAAATCCACCTTACTGTTGCA
AACGCTGGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAGTCATTACAACAAGTTGCCATGCGTG
CCCAAAGATTGGGGCTACCTTTGGCCGGATTGCGGCTATTGGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCCCAA
AAGGAAAAACCGCGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGGAGT
TAGTCAAGTCAGGGAATCAGCAGCACAATTGGTGCGTTATGCCAAGATGACCAATACGGCCATCTTCCTGGTAGGGCATG
TCACCAAGGAAGGAACATTAGCCGGGCCTCGGGTGTTAGAACATATGGTTGATAGTGTTCTCTATTTTGAGGGGCAAAAT
GATAGTCGCTTCAGAGTCATTCGCGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTAGGTGTATTTGCGATGACTGA
CAAAGGCCTGAAGGAGGTAGCCAACCCTTCAGCTATTTTTTTATCTCGCCAGCCCGAACCTACGCCTGGCAGTGCAGTGA
TGGTGACTTGGGAAGGATCAAGACCCATGTTGGTAGAAGTACAAGCATTGGTTGATGAGGCCCATGGTCAGCAAGCGAAA
CGCGTTACTGCGGGTCTTGAGCATAATCGCTTGGCCATTTTGTTAGCTGTTTTACACCGTCATGGAGGTATCGCTACTTA
CGATCAGGATGTTTTTATCAATGTAGTCGGGGGAGTAAAAGTGACTGAAACAGCGAGTGATTTGGCTTTGTTGGCTGCAG
TGATCTCAAGTTTACGTAATCGTATATTTGATAGTGAAACCATCATATTCGGTGAAGTGGGATTAGCCGGGGAAATCAGG
CCAGTGCAAAGTGGTCAAGAACGCATTAAGGAGGCTATAAAACATGGATTCAAGCGTGCTATAGTCCCTTTTGCCAACGC
TCCCAAACAGCAACTCGATTCCATGACGGTCGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Subunit ChlI of Mg-chelatase (ChlI)

(328-426)

AAA domain (AAA_25)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.492

95.778

0.464
  radA Streptococcus pneumoniae Rx1

48.341

93.778

0.453
  radA Streptococcus pneumoniae D39

48.341

93.778

0.453
  radA Streptococcus pneumoniae R6

48.341

93.778

0.453
  radA Streptococcus pneumoniae TIGR4

48.341

93.778

0.453
  radA Streptococcus mitis SK321

48.341

93.778

0.453
  radA Streptococcus mitis NCTC 12261

48.104

93.778

0.451

Multiple sequence alignment