Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilC   Type   Machinery gene
Locus tag   A6L58_RS14910 Genome accession   NZ_CP016682
Coordinates   52855..52977 (+) Length   40 a.a.
NCBI ID   WP_306807940.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M24705     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 47855..57977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L58_RS00200 (A6L58_00200) hpaC 48224..48724 (-) 501 WP_002233027.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -
  A6L58_RS00205 (A6L58_00205) nadR 48839..49279 (-) 441 WP_002221507.1 MarR family adhesin repressor NadR -
  A6L58_RS00215 (A6L58_00215) - 49622..50131 (-) 510 WP_002240006.1 protein disulfide oxidoreductase -
  A6L58_RS00225 (A6L58_00225) apbC 50496..51575 (+) 1080 WP_002239302.1 iron-sulfur cluster carrier protein ApbC -
  A6L58_RS14910 pilC 52855..52977 (+) 123 WP_306807940.1 hypothetical protein Machinery gene
  A6L58_RS00230 (A6L58_00230) pilC 52974..55943 (+) 2970 WP_025464225.1 PilC family type IV pilus tip adhesin Machinery gene

Sequence


Protein


Download         Length: 40 a.a.        Molecular weight: 4556.43 Da        Isoelectric Point: 12.8111

>NTDB_id=191747 A6L58_RS14910 WP_306807940.1 52855..52977(+) (pilC) [Neisseria meningitidis strain M24705]
MNKTLKRRVFRHTALYAAILMFSHTGGGGRRRKPVNTLLS

Nucleotide


Download         Length: 123 bp        

>NTDB_id=191747 A6L58_RS14910 WP_306807940.1 52855..52977(+) (pilC) [Neisseria meningitidis strain M24705]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGCGCAGGCGCAAACCCGTCAATACGCTATTATCATGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

96.552

72.5

0.7


Multiple sequence alignment