Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CA928_RS13515 Genome accession   NZ_CP021264
Coordinates   3003691..3004482 (-) Length   263 a.a.
NCBI ID   WP_027229124.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-5387     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2998691..3009482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA928_RS13500 legS1 3000005..3001162 (-) 1158 WP_027229126.1 Dot/Icm T4SS effector LegS1 -
  CA928_RS15735 - 3001207..3001368 (-) 162 WP_154219817.1 hypothetical protein -
  CA928_RS13510 dacB 3001806..3003599 (-) 1794 WP_027229125.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  CA928_RS13515 spo0J 3003691..3004482 (-) 792 WP_027229124.1 ParB/RepB/Spo0J family partition protein Regulator
  CA928_RS13520 - 3004597..3005100 (-) 504 WP_027229123.1 hypothetical protein -
  CA928_RS13525 - 3005275..3006024 (-) 750 WP_027229122.1 CPBP family glutamic-type intramembrane protease -
  CA928_RS13530 rsmB 3006021..3007304 (-) 1284 WP_027229121.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CA928_RS13535 fmt 3007301..3008245 (-) 945 WP_027229120.1 methionyl-tRNA formyltransferase -
  CA928_RS13540 def 3008242..3008754 (-) 513 WP_027229119.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30047.30 Da        Isoelectric Point: 6.2513

>NTDB_id=191701 CA928_RS13515 WP_027229124.1 3003691..3004482(-) (spo0J) [Legionella pneumophila subsp. fraseri strain D-5387]
MQSRFTYLPITSLQAGQYQPRQDFNATELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLTEIPCLIG
DYSDKQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPDQQEMFAHQIIGEEWSVRHLEQEIKSYKNKDMGSPKNPRKDRDIERLQTILAEQVGAPVQIINEGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=191701 CA928_RS13515 WP_027229124.1 3003691..3004482(-) (spo0J) [Legionella pneumophila subsp. fraseri strain D-5387]
ATGCAATCCCGATTTACTTATTTACCTATTACGAGTCTGCAGGCAGGTCAGTATCAACCCAGACAAGATTTTAATGCAAC
TGAGTTACAGGAATTGGCTCAGTCCATTTCTTCTCAAGGGTTAATTGAACCCTTGGTTGTAAGACCCATTGCAAAAGAGC
GATATGAGATTATTGCAGGGGAAAGAAGATGGCGTGCGGCCAAATTGGCGGGATTAACTGAAATCCCCTGTCTAATTGGT
GACTATAGTGATAAGCAGGCGTGTGCTCTGACTTTAATCGAAAATATTCAGCGCCAGGATTTGAATTTAATTGAGGAAGC
AACTGGTTATAAGCGTTTAATTGAAGAATTTCATTATCATCAGGACGAAATCGCGGCCTTGGTTGGTAAGTCTCGTAGCC
ATGTTGCAAATATTCTTCGCCTCCTTACCTTAACAGATAAGGTTAAACAGTTAGTTCGAGACAAAGTGTTATCTTTTGGA
CATGCTCGCGTATTGGTTGGCTTAAATCCTGATCAGCAAGAAATGTTTGCTCACCAGATTATTGGAGAGGAATGGTCTGT
CAGGCACTTGGAGCAAGAAATTAAATCTTACAAAAATAAAGATATGGGCAGCCCCAAAAATCCGAGGAAAGACAGAGATA
TTGAACGACTACAGACTATCCTGGCCGAGCAAGTGGGTGCTCCTGTACAAATTATAAACGAAGGTGAGGATGGAGGCTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGTTTGGGCTTGCGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

38.077

98.859

0.376

Multiple sequence alignment