Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L58_RS14300 Genome accession   NZ_CP016682
Coordinates   709774..710238 (+) Length   154 a.a.
NCBI ID   WP_164967094.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M24705     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 704774..715238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L58_RS14300 (A6L58_03690) comE 709774..710238 (+) 465 WP_164967094.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6L58_RS14650 - 710350..710808 (+) 459 WP_002234522.1 hypothetical protein -
  A6L58_RS03700 (A6L58_03700) - 710928..711581 (+) 654 WP_019742811.1 IS1595 family transposase -
  A6L58_RS03705 (A6L58_03705) - 711746..711955 (+) 210 Protein_685 transposase -
  A6L58_RS03710 (A6L58_03710) - 711937..712194 (-) 258 WP_002231679.1 membrane protein -
  A6L58_RS13680 - 712472..712699 (+) 228 WP_153310284.1 hypothetical protein -
  A6L58_RS03720 (A6L58_03720) aroG 712861..713916 (+) 1056 WP_002212267.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  A6L58_RS03725 (A6L58_03725) - 713984..714472 (+) 489 WP_002218701.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16442.72 Da        Isoelectric Point: 10.7894

>NTDB_id=191744 A6L58_RS14300 WP_164967094.1 709774..710238(+) (comE) [Neisseria meningitidis strain M24705]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=191744 A6L58_RS14300 WP_164967094.1 709774..710238(+) (comE) [Neisseria meningitidis strain M24705]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment