Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L24_RS06240 Genome accession   NZ_CP016681
Coordinates   1183359..1183952 (+) Length   197 a.a.
NCBI ID   WP_002248275.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M08000     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178359..1188952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L24_RS06215 (A6L24_06215) - 1178822..1179409 (-) 588 WP_002220670.1 superoxide dismutase -
  A6L24_RS06220 (A6L24_06220) dnaB 1179572..1180978 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L24_RS06225 (A6L24_06225) pilH 1181133..1181810 (+) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L24_RS06230 (A6L24_06230) pilV 1181834..1182445 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L24_RS06235 (A6L24_06235) pilJ 1182442..1183380 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L24_RS06240 (A6L24_06240) pilK 1183359..1183952 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L24_RS06245 (A6L24_06245) pilX 1183957..1184430 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L24_RS06250 (A6L24_06250) - 1186334..1186762 (-) 429 Protein_1175 AzlC family ABC transporter permease -
  A6L24_RS06255 (A6L24_06255) dut 1186905..1187357 (+) 453 WP_002220679.1 dUTP diphosphatase -
  A6L24_RS06260 (A6L24_06260) dapC 1187433..1188620 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  A6L24_RS14665 - 1188708..1188833 (+) 126 Protein_1178 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21725.67 Da        Isoelectric Point: 6.3911

>NTDB_id=191682 A6L24_RS06240 WP_002248275.1 1183359..1183952(+) (pilK) [Neisseria meningitidis strain M08000]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=191682 A6L24_RS06240 WP_002248275.1 1183359..1183952(+) (pilK) [Neisseria meningitidis strain M08000]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment