Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A6L50_RS05085 Genome accession   NZ_CP016680
Coordinates   956210..957013 (+) Length   267 a.a.
NCBI ID   WP_002221259.1    Uniprot ID   Q9JVB7
Organism   Neisseria meningitidis strain M22822     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 951210..962013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L50_RS05065 (A6L50_05065) lptE 952070..952549 (-) 480 WP_002214127.1 LPS assembly lipoprotein LptE -
  A6L50_RS05070 (A6L50_05070) pgeF 952601..953380 (-) 780 WP_002235607.1 peptidoglycan editing factor PgeF -
  A6L50_RS05075 (A6L50_05075) - 953987..954934 (+) 948 WP_002234743.1 bile acid:sodium symporter family protein -
  A6L50_RS05080 (A6L50_05080) rluD 955087..956211 (-) 1125 WP_002234742.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A6L50_RS05085 (A6L50_05085) comL 956210..957013 (+) 804 WP_002221259.1 outer membrane protein assembly factor BamD Machinery gene
  A6L50_RS05090 (A6L50_05090) comA 957071..959290 (-) 2220 WP_153559659.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A6L50_RS15695 - 959372..959563 (+) 192 Protein_927 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30808.83 Da        Isoelectric Point: 8.9351

>NTDB_id=191620 A6L50_RS05085 WP_002221259.1 956210..957013(+) (comL) [Neisseria meningitidis strain M22822]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=191620 A6L50_RS05085 WP_002221259.1 956210..957013(+) (comL) [Neisseria meningitidis strain M22822]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
TCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCTTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTATCAGGCCTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCGCAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCCTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JVB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.502

100

0.985
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment