Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CA930_RS06230 Genome accession   NZ_CP021263
Coordinates   1374526..1375125 (+) Length   199 a.a.
NCBI ID   WP_027226815.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-3137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1369526..1380125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA930_RS06205 - 1369872..1370612 (+) 741 WP_032830130.1 peptidoglycan DD-metalloendopeptidase family protein -
  CA930_RS06210 rpoS 1370698..1371723 (+) 1026 WP_027226811.1 RNA polymerase sigma factor RpoS Regulator
  CA930_RS06215 hmgA 1371866..1373116 (-) 1251 WP_027226812.1 homogentisate 1,2-dioxygenase -
  CA930_RS06220 - 1373262..1374005 (+) 744 WP_027226813.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CA930_RS06225 ruvC 1374005..1374529 (+) 525 WP_027226814.1 crossover junction endodeoxyribonuclease RuvC -
  CA930_RS06230 ruvA 1374526..1375125 (+) 600 WP_027226815.1 Holliday junction branch migration protein RuvA Machinery gene
  CA930_RS06235 - 1375184..1375504 (+) 321 WP_027226816.1 hypothetical protein -
  CA930_RS06240 lem8 1375582..1377141 (-) 1560 WP_027226817.1 Dot/Icm T4SS effector Lem8 -
  CA930_RS06245 - 1377430..1378845 (-) 1416 WP_027226818.1 ATP-binding protein -
  CA930_RS06250 ciaR 1378842..1379519 (-) 678 WP_011213604.1 response regulator Regulator
  CA930_RS06255 - 1379580..1380125 (-) 546 WP_027221489.1 septation protein A -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22074.29 Da        Isoelectric Point: 6.4932

>NTDB_id=191597 CA930_RS06230 WP_027226815.1 1374526..1375125(+) (ruvA) [Legionella pneumophila subsp. fraseri strain D-3137]
MIGWLHGQIVDRHQPGKLVLDVNGVGYDVETSLNTFFQIENDNQSVGLHIHTIVREDALLLYGFLDKEERSLFRALIKVN
GVGPKLAMAILSSISPKEFIQCIHQENAALLTKLPGIGKKTAERLVIEMRDSIKQFDGSVSDTLQKQAGSAHSQEEAISA
LEALGYKPQEAWKVVNKIDNGNKSCEQLIREALQILSSR

Nucleotide


Download         Length: 600 bp        

>NTDB_id=191597 CA930_RS06230 WP_027226815.1 1374526..1375125(+) (ruvA) [Legionella pneumophila subsp. fraseri strain D-3137]
ATGATAGGTTGGCTCCATGGTCAAATTGTAGATAGGCATCAGCCAGGAAAATTGGTTCTTGATGTCAATGGAGTGGGGTA
TGATGTAGAAACCTCTTTGAATACTTTTTTTCAGATAGAAAATGATAATCAATCGGTTGGATTACATATTCACACGATAG
TTCGAGAAGATGCCTTGTTATTGTATGGCTTCCTGGATAAAGAGGAGCGTTCTTTATTCAGAGCATTAATTAAAGTGAAT
GGGGTAGGCCCCAAACTGGCTATGGCTATTTTATCCAGTATTTCTCCTAAGGAATTTATTCAGTGCATTCACCAGGAAAA
CGCTGCTTTGTTAACCAAGCTACCTGGTATAGGTAAGAAAACTGCAGAACGATTAGTAATCGAGATGAGAGACAGTATAA
AGCAATTTGATGGTTCGGTTTCTGATACTCTCCAAAAACAGGCAGGTAGTGCTCATAGTCAAGAAGAAGCGATTAGCGCG
TTGGAAGCATTAGGTTATAAGCCACAAGAGGCTTGGAAAGTTGTGAATAAAATTGATAATGGTAATAAGAGTTGTGAGCA
GTTGATTCGTGAGGCTTTGCAAATTCTTTCTTCGCGATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(73-131)

RuvA N terminal domain (RuvA_N)

(1-63)

RuvA, C-terminal domain (RuvA_C)

(154-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.784

100

0.367

Multiple sequence alignment