Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   A6M07_RS14610 Genome accession   NZ_CP016676
Coordinates   1042252..1042374 (+) Length   40 a.a.
NCBI ID   WP_324248582.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25476     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1037252..1047374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M07_RS05380 (A6M07_05380) murU 1037659..1038354 (-) 696 WP_065826262.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  A6M07_RS05385 (A6M07_05385) hpaC 1038372..1038872 (-) 501 WP_002248346.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -
  A6M07_RS05390 (A6M07_05390) nadR 1038987..1039427 (-) 441 WP_002221507.1 MarR family adhesin repressor NadR -
  A6M07_RS05400 (A6M07_05400) - 1039770..1040279 (-) 510 WP_002259078.1 protein disulfide oxidoreductase -
  A6M07_RS05410 (A6M07_05410) apbC 1040644..1041723 (+) 1080 WP_002259079.1 iron-sulfur cluster carrier protein ApbC -
  A6M07_RS14610 pilC 1042252..1042374 (+) 123 WP_324248582.1 hypothetical protein Machinery gene
  A6M07_RS05415 (A6M07_05415) pilC 1042371..1045340 (+) 2970 WP_065825006.1 PilC family type IV pilus tip adhesin Machinery gene

Sequence

Protein


Download         Length: 40 a.a.        Molecular weight: 4515.37 Da        Isoelectric Point: 12.6908

>NTDB_id=191462 A6M07_RS14610 WP_324248582.1 1042252..1042374(+) (pilC) [Neisseria meningitidis strain M25476]
MNKTLKRQVFRHTALYAAILMFSHTGGGGRRRKPVTTLLS

Nucleotide


Download         Length: 123 bp        

>NTDB_id=191462 A6M07_RS14610 WP_324248582.1 1042252..1042374(+) (pilC) [Neisseria meningitidis strain M25476]
ATGAATAAAACTTTAAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGCGCAGGCGGAAACCCGTAACTACGCTATTGTCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

100

72.5

0.725

Multiple sequence alignment