Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L20_RS06935 Genome accession   NZ_CP016675
Coordinates   1333179..1333643 (-) Length   154 a.a.
NCBI ID   WP_025463168.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M07161     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1330579..1343694 1333179..1333643 within 0
IS/Tn 1331650..1332303 1333179..1333643 flank 876


Gene organization within MGE regions


Location: 1330579..1343694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L20_RS06910 (A6L20_06910) - 1331037..1331294 (+) 258 WP_002241061.1 membrane protein -
  A6L20_RS06915 (A6L20_06915) - 1331276..1331485 (-) 210 Protein_1287 transposase -
  A6L20_RS06920 (A6L20_06920) - 1331650..1332303 (-) 654 WP_002241060.1 IS1595 family transposase -
  A6L20_RS14360 (A6L20_06925) - 1332423..1332629 (-) 207 WP_002220254.1 hypothetical protein -
  A6L20_RS06930 (A6L20_06930) - 1332861..1333067 (-) 207 WP_025461473.1 hypothetical protein -
  A6L20_RS06935 (A6L20_06935) comE 1333179..1333643 (-) 465 WP_025463168.1 ComEA family DNA-binding protein Machinery gene
  A6L20_RS06970 (A6L20_06970) - 1339442..1340248 (-) 807 WP_002221447.1 cytochrome C assembly family protein -
  A6L20_RS06975 (A6L20_06975) ffh 1340468..1341838 (+) 1371 WP_002221448.1 signal recognition particle protein -
  A6L20_RS06980 (A6L20_06980) dsbA2 1342169..1342864 (-) 696 WP_002215704.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  A6L20_RS06985 (A6L20_06985) - 1343035..1343694 (-) 660 WP_002218694.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16561.83 Da        Isoelectric Point: 10.9695

>NTDB_id=191395 A6L20_RS06935 WP_025463168.1 1333179..1333643(-) (comE) [Neisseria meningitidis strain M07161]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=191395 A6L20_RS06935 WP_025463168.1 1333179..1333643(-) (comE) [Neisseria meningitidis strain M07161]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment