Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CA270_RS09145 Genome accession   NZ_CP021207
Coordinates   1769604..1770341 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain strain Z247     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1764604..1775341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA270_RS09130 (CA270_09140) clpC 1765058..1767631 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CA270_RS09135 (CA270_09145) yfiH 1767761..1768492 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  CA270_RS09140 (CA270_09150) rluD 1768489..1769469 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CA270_RS09145 (CA270_09155) comL 1769604..1770341 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CA270_RS09155 (CA270_09165) raiA 1770611..1770952 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CA270_RS28350 pheL 1771056..1771103 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CA270_RS09160 (CA270_09170) pheA 1771202..1772362 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  CA270_RS09165 (CA270_09175) tyrA 1772405..1773526 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CA270_RS09170 (CA270_09180) aroF 1773537..1774607 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CA270_RS09175 (CA270_09185) yfiL 1774817..1775182 (+) 366 WP_086353146.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=191301 CA270_RS09145 WP_000197686.1 1769604..1770341(+) (comL) [Escherichia coli strain strain Z247]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=191301 CA270_RS09145 WP_000197686.1 1769604..1770341(+) (comL) [Escherichia coli strain strain Z247]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment