Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L51_RS14130 Genome accession   NZ_CP016672
Coordinates   358357..358821 (+) Length   154 a.a.
NCBI ID   WP_164742033.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22828     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 352176..367280 358357..358821 within 0


Gene organization within MGE regions


Location: 352176..367280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L51_RS01880 (A6L51_01880) dksA 352176..352592 (+) 417 WP_002231430.1 RNA polymerase-binding protein DksA -
  A6L51_RS14130 comE 358357..358821 (+) 465 WP_164742033.1 ComEA family DNA-binding protein Machinery gene
  A6L51_RS01930 (A6L51_01930) dnaJ 359091..360212 (+) 1122 WP_002235332.1 molecular chaperone DnaJ -
  A6L51_RS01935 (A6L51_01935) - 360408..362426 (+) 2019 WP_002216177.1 OPT family oligopeptide transporter -
  A6L51_RS01940 (A6L51_01940) rfbC 362470..363027 (-) 558 WP_002234441.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  A6L51_RS01945 (A6L51_01945) rfbA 363072..363962 (-) 891 WP_002258018.1 glucose-1-phosphate thymidylyltransferase RfbA -
  A6L51_RS01950 (A6L51_01950) rfbB 364159..365241 (-) 1083 WP_002258424.1 dTDP-glucose 4,6-dehydratase -
  A6L51_RS14445 (A6L51_01955) galE 365242..365862 (-) 621 Protein_362 UDP-glucose 4-epimerase GalE -
  A6L51_RS14450 (A6L51_01960) - 365941..366285 (-) 345 WP_002231447.1 DNA adenine methylase -
  A6L51_RS14675 (A6L51_01965) - 366278..366472 (-) 195 WP_002215282.1 DNA cytosine methyltransferase -
  A6L51_RS01970 (A6L51_01970) - 366450..367226 (-) 777 WP_002259546.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16514.78 Da        Isoelectric Point: 10.6993

>NTDB_id=191269 A6L51_RS14130 WP_164742033.1 358357..358821(+) (comE) [Neisseria meningitidis strain M22828]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=191269 A6L51_RS14130 WP_164742033.1 358357..358821(+) (comE) [Neisseria meningitidis strain M22828]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTGAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment