Detailed information NTG0191269

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA268_RS23525
• Genome accession: NZ_CP021202
• Coordinates: 4561075..4562067 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Z1002
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4556075..4567067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA268_RS23500 (CA268_23465)	ygbN	4556730..4558094 (+)	1365	WP_024166527.1	GntP family transporter	-
CA268_RS23505 (CA268_23470)	-	4558133..4558369 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CA268_RS23510 (CA268_23475)	-	4558380..4559807 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CA268_RS23515 (CA268_23480)	-	4559807..4560400 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CA268_RS23520 (CA268_23485)	-	4560547..4560954 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
CA268_RS23525 (CA268_23490)	rpoS	4561075..4562067 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CA268_RS23530 (CA268_23495)	nlpD	4562130..4563224 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CA268_RS23535 (CA268_23500)	pcm	4563409..4564035 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CA268_RS23540 (CA268_23505)	surE	4564029..4564790 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CA268_RS23545 (CA268_23510)	truD	4564771..4565820 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
CA268_RS23550 (CA268_23515)	ispF	4565817..4566296 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CA268_RS23555 (CA268_23520)	ispD	4566296..4567006 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=191269 CA268_RS23525 WP_000081550.1 4561075..4562067(-) (rpoS) [Escherichia coli strain Z1002]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=191269 CA268_RS23525 WP_000081550.1 4561075..4562067(-) (rpoS) [Escherichia coli strain Z1002]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715