Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L51_RS14110 Genome accession   NZ_CP016672
Coordinates   159364..159828 (-) Length   154 a.a.
NCBI ID   WP_164732055.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22828     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 154364..164828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L51_RS00765 (A6L51_00765) - 154709..156166 (+) 1458 WP_002258745.1 VWA domain-containing protein -
  A6L51_RS11510 - 156203..156954 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  A6L51_RS00785 (A6L51_00785) - 157368..157841 (-) 474 Protein_146 transposase -
  A6L51_RS00790 (A6L51_00790) - 158073..158285 (+) 213 WP_002224145.1 SWIM zinc finger family protein -
  A6L51_RS14820 (A6L51_00795) - 158469..158737 (+) 269 Protein_148 5'-nucleotidase -
  A6L51_RS00800 (A6L51_00800) comP 158827..159276 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  A6L51_RS14110 comE 159364..159828 (-) 465 WP_164732055.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16486.82 Da        Isoelectric Point: 10.9585

>NTDB_id=191268 A6L51_RS14110 WP_164732055.1 159364..159828(-) (comE) [Neisseria meningitidis strain M22828]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=191268 A6L51_RS14110 WP_164732055.1 159364..159828(-) (comE) [Neisseria meningitidis strain M22828]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727

Multiple sequence alignment