Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L42_RS14345 Genome accession   NZ_CP016671
Coordinates   1203547..1204011 (-) Length   154 a.a.
NCBI ID   WP_164993478.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22783     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1198547..1209011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L42_RS06270 (A6L42_06270) - 1199831..1200103 (-) 273 WP_002212673.1 ACT domain-containing protein -
  A6L42_RS06275 (A6L42_06275) - 1200229..1200966 (-) 738 WP_002229783.1 toxin-antitoxin system YwqK family antitoxin -
  A6L42_RS06285 (A6L42_06285) prmB 1201247..1202146 (-) 900 WP_002235090.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  A6L42_RS06290 (A6L42_06290) - 1202291..1202884 (+) 594 WP_002229776.1 hypothetical protein -
  A6L42_RS06295 (A6L42_06295) - 1202996..1203433 (+) 438 Protein_1170 HK97 family phage prohead protease -
  A6L42_RS14345 (A6L42_06300) comE 1203547..1204011 (-) 465 WP_164993478.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16486.82 Da        Isoelectric Point: 10.9585

>NTDB_id=191221 A6L42_RS14345 WP_164993478.1 1203547..1204011(-) (comE) [Neisseria meningitidis strain M22783]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=191221 A6L42_RS14345 WP_164993478.1 1203547..1204011(-) (comE) [Neisseria meningitidis strain M22783]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTGAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment