Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   A6L42_RS07940 Genome accession   NZ_CP016671
Coordinates   1530065..1530763 (-) Length   232 a.a.
NCBI ID   WP_002224844.1    Uniprot ID   Q9K189
Organism   Neisseria meningitidis strain M22783     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525065..1535763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L42_RS07925 (A6L42_07925) - 1525387..1526421 (-) 1035 WP_002260088.1 peptidylprolyl isomerase -
  A6L42_RS07930 (A6L42_07930) - 1526526..1528934 (-) 2409 WP_002240242.1 LPS-assembly protein LptD -
  A6L42_RS07935 (A6L42_07935) amgK 1529004..1530008 (+) 1005 WP_002221582.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  A6L42_RS07940 (A6L42_07940) dsbA1 1530065..1530763 (-) 699 WP_002224844.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  A6L42_RS15070 - 1531057..1531164 (-) 108 Protein_1469 IS5/IS1182 family transposase -
  A6L42_RS07945 (A6L42_07945) murJ 1531222..1532760 (+) 1539 WP_002226012.1 murein biosynthesis integral membrane protein MurJ -
  A6L42_RS07950 (A6L42_07950) - 1532893..1533849 (+) 957 WP_002234510.1 YheT family hydrolase -
  A6L42_RS07955 (A6L42_07955) trpC 1533900..1534682 (+) 783 WP_002234509.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25249.83 Da        Isoelectric Point: 5.6277

>NTDB_id=191210 A6L42_RS07940 WP_002224844.1 1530065..1530763(-) (dsbA1) [Neisseria meningitidis strain M22783]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=191210 A6L42_RS07940 WP_002224844.1 1530065..1530763(-) (dsbA1) [Neisseria meningitidis strain M22783]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTTTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGTAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3A3T
  PDB 3DVW
  PDB 3HZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

100

100

1
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment