Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6M08_RS10580 Genome accession   NZ_CP016667
Coordinates   2058085..2058678 (-) Length   197 a.a.
NCBI ID   WP_002248275.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M27559     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2053085..2063678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M08_RS14755 - 2053204..2053329 (-) 126 Protein_1969 IS5/IS1182 family transposase -
  A6M08_RS10560 (A6M08_10560) dapC 2053417..2054604 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  A6M08_RS10565 (A6M08_10565) dut 2054680..2055132 (-) 453 WP_002220679.1 dUTP diphosphatase -
  A6M08_RS10570 (A6M08_10570) - 2055275..2055703 (+) 429 Protein_1972 AzlC family ABC transporter permease -
  A6M08_RS10575 (A6M08_10575) pilX 2057607..2058080 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6M08_RS10580 (A6M08_10580) pilK 2058085..2058678 (-) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6M08_RS10585 (A6M08_10585) pilJ 2058657..2059595 (-) 939 WP_002248274.1 PilW family protein Machinery gene
  A6M08_RS10590 (A6M08_10590) pilV 2059592..2060203 (-) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6M08_RS10595 (A6M08_10595) pilH 2060227..2060904 (-) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6M08_RS10600 (A6M08_10600) dnaB 2061059..2062465 (-) 1407 WP_002248271.1 replicative DNA helicase -
  A6M08_RS10605 (A6M08_10605) - 2062628..2063215 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21725.67 Da        Isoelectric Point: 6.3911

>NTDB_id=191036 A6M08_RS10580 WP_002248275.1 2058085..2058678(-) (pilK) [Neisseria meningitidis strain M27559]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=191036 A6M08_RS10580 WP_002248275.1 2058085..2058678(-) (pilK) [Neisseria meningitidis strain M27559]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment