Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6M08_RS04600 Genome accession   NZ_CP016667
Coordinates   870120..870584 (+) Length   154 a.a.
NCBI ID   WP_162818945.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M27559     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 865120..875584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M08_RS04600 (A6M08_04600) comE 870120..870584 (+) 465 WP_162818945.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6M08_RS04605 (A6M08_04605) comP 870672..871121 (+) 450 WP_002221685.1 type IV pilin protein Machinery gene
  A6M08_RS04610 (A6M08_04610) - 871211..871605 (-) 395 Protein_868 5'-nucleotidase -
  A6M08_RS12005 - 871818..872168 (+) 351 Protein_869 IS5/IS1182 family transposase -
  A6M08_RS04615 (A6M08_04615) - 872194..873159 (-) 966 WP_002216744.1 IS30-like element IS1655 family transposase -
  A6M08_RS13420 - 873249..873374 (+) 126 Protein_871 IS5/IS1182 family transposase -
  A6M08_RS04630 (A6M08_04630) - 873780..874835 (+) 1056 WP_002221681.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16459.71 Da        Isoelectric Point: 10.9585

>NTDB_id=191013 A6M08_RS04600 WP_162818945.1 870120..870584(+) (comE) [Neisseria meningitidis strain M27559]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=191013 A6M08_RS04600 WP_162818945.1 870120..870584(+) (comE) [Neisseria meningitidis strain M27559]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment