Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L64_RS09205 Genome accession   NZ_CP016664
Coordinates   1801301..1801894 (+) Length   197 a.a.
NCBI ID   WP_002248275.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25070     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1796301..1806894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L64_RS09180 (A6L64_09180) - 1796765..1797352 (-) 588 WP_002220670.1 superoxide dismutase -
  A6L64_RS09185 (A6L64_09185) dnaB 1797515..1798921 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L64_RS09190 (A6L64_09190) - 1799076..1799752 (+) 677 Protein_1704 GspH/FimT family pseudopilin -
  A6L64_RS09195 (A6L64_09195) pilV 1799776..1800387 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L64_RS09200 (A6L64_09200) pilJ 1800384..1801322 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L64_RS09205 (A6L64_09205) pilK 1801301..1801894 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L64_RS09210 (A6L64_09210) pilX 1801899..1802372 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L64_RS09215 (A6L64_09215) - 1804276..1804704 (-) 429 Protein_1709 AzlC family ABC transporter permease -
  A6L64_RS09220 (A6L64_09220) dut 1804847..1805299 (+) 453 WP_002220679.1 dUTP diphosphatase -
  A6L64_RS09225 (A6L64_09225) dapC 1805375..1806562 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  A6L64_RS14720 - 1806650..1806775 (+) 126 Protein_1712 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21725.67 Da        Isoelectric Point: 6.3911

>NTDB_id=190899 A6L64_RS09205 WP_002248275.1 1801301..1801894(+) (pilK) [Neisseria meningitidis strain M25070]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=190899 A6L64_RS09205 WP_002248275.1 1801301..1801894(+) (pilK) [Neisseria meningitidis strain M25070]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment