Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   B9N48_RS18750 Genome accession   NZ_CP021169
Coordinates   3577220..3577339 (+) Length   39 a.a.
NCBI ID   WP_041334633.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3572220..3582339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS18725 albG 3572383..3573084 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  B9N48_RS18730 ywhL 3573090..3574466 (-) 1377 WP_086344439.1 YncE family protein -
  B9N48_RS18735 ywhK 3574506..3575861 (-) 1356 WP_086344440.1 YncE family protein -
  B9N48_RS21080 - 3575858..3576088 (-) 231 WP_024572000.1 hypothetical protein -
  B9N48_RS18745 rapF 3576091..3577236 (+) 1146 WP_086344441.1 response regulator aspartate phosphatase RapF Regulator
  B9N48_RS18750 phrF 3577220..3577339 (+) 120 WP_041334633.1 phosphatase RapF inhibitor PhrF Regulator
  B9N48_RS18755 - 3577437..3577909 (+) 473 Protein_3637 YbaK/EbsC family protein -
  B9N48_RS18760 speB 3577941..3578813 (-) 873 WP_003227545.1 agmatinase -
  B9N48_RS18765 speE 3578874..3579704 (-) 831 WP_003227543.1 spermidine synthase -
  B9N48_RS18770 pbpG 3579906..3581981 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4215.16 Da        Isoelectric Point: 9.5675

>NTDB_id=190844 B9N48_RS18750 WP_041334633.1 3577220..3577339(+) (phrF) [Bacillus subtilis strain TLO3]
MKLKSKLLLSCLALCTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=190844 B9N48_RS18750 WP_041334633.1 3577220..3577339(+) (phrF) [Bacillus subtilis strain TLO3]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTATGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment