Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B9N48_RS16585 Genome accession   NZ_CP021169
Coordinates   3159868..3160503 (-) Length   211 a.a.
NCBI ID   WP_021480575.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3154868..3165503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS16565 yvzF 3155925..3156110 (-) 186 WP_003221676.1 YvzF family protein -
  B9N48_RS16570 gerAA 3156228..3157676 (+) 1449 WP_086344296.1 spore germination receptor protein GerAA -
  B9N48_RS16575 gerAB 3157645..3158742 (+) 1098 WP_086344297.1 spore germination receptor protein GerAB -
  B9N48_RS16580 gerAC 3158739..3159860 (+) 1122 WP_086344298.1 spore germination receptor protein GerAC -
  B9N48_RS16585 vraR 3159868..3160503 (-) 636 WP_021480575.1 two-component system response regulator LiaR Regulator
  B9N48_RS16590 liaS 3160481..3161563 (-) 1083 WP_063334640.1 two-component system sensor histidine kinase LiaS -
  B9N48_RS16595 liaF 3161560..3162285 (-) 726 WP_076457597.1 LiaRS two-component regulatory system accessory protein LiaF -
  B9N48_RS16600 liaG 3162319..3163191 (-) 873 WP_086344299.1 DUF4097 domain-containing protein -
  B9N48_RS16605 liaH 3163292..3163969 (-) 678 WP_003243047.1 stress responsive protein LiaH -
  B9N48_RS16610 liaI 3163996..3164376 (-) 381 WP_042974723.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23110.77 Da        Isoelectric Point: 5.0313

>NTDB_id=190827 B9N48_RS16585 WP_021480575.1 3159868..3160503(-) (vraR) [Bacillus subtilis strain TLO3]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=190827 B9N48_RS16585 WP_021480575.1 3159868..3160503(-) (vraR) [Bacillus subtilis strain TLO3]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCACTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACGCATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCAGTGTACGCACATCGAAACCATCTCGTAAAATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.408

Multiple sequence alignment