Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L93_RS03675 Genome accession   NZ_CP016661
Coordinates   704885..705349 (+) Length   154 a.a.
NCBI ID   WP_181778300.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25438     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 699885..710349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L93_RS03675 (A6L93_03675) comE 704885..705349 (+) 465 WP_181778300.1 ComEA family DNA-binding protein Machinery gene
  A6L93_RS03680 (A6L93_03680) - 705461..705667 (+) 207 WP_025461473.1 hypothetical protein -
  A6L93_RS03685 (A6L93_03685) - 705899..706105 (+) 207 WP_002220254.1 hypothetical protein -
  A6L93_RS03690 (A6L93_03690) - 706225..706878 (+) 654 WP_002241060.1 IS1595 family transposase -
  A6L93_RS03695 (A6L93_03695) - 707043..707252 (+) 210 Protein_690 transposase -
  A6L93_RS03700 (A6L93_03700) - 707234..707491 (-) 258 WP_002241061.1 membrane protein -
  A6L93_RS03705 (A6L93_03705) aroG 708158..709213 (+) 1056 WP_002216371.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  A6L93_RS03710 (A6L93_03710) - 709281..709769 (+) 489 WP_002216373.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16501.79 Da        Isoelectric Point: 10.9585

>NTDB_id=190733 A6L93_RS03675 WP_181778300.1 704885..705349(+) (comE) [Neisseria meningitidis strain M25438]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=190733 A6L93_RS03675 WP_181778300.1 704885..705349(+) (comE) [Neisseria meningitidis strain M25438]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment