Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CAH07_RS16380 Genome accession   NZ_CP021123
Coordinates   3140176..3140823 (-) Length   215 a.a.
NCBI ID   WP_038427552.1    Uniprot ID   -
Organism   Bacillus subtilis strain SEM-9     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3135176..3145823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS16355 (CAH07_16175) nsrR 3136773..3137213 (+) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  CAH07_RS16360 (CAH07_16180) lytF 3137366..3138832 (+) 1467 WP_101172531.1 peptidoglycan endopeptidase LytF -
  CAH07_RS16365 (CAH07_16185) yhdC 3138874..3139197 (-) 324 WP_014476269.1 YqzG/YhdC family protein -
  CAH07_RS16370 (CAH07_16190) yhdB 3139398..3139640 (+) 243 WP_003233373.1 YhdB family protein -
  CAH07_RS16375 (CAH07_16195) yhdA 3139655..3140179 (-) 525 WP_003244703.1 FMN-dependent NADPH-azoreductase -
  CAH07_RS16380 (CAH07_16200) vraR 3140176..3140823 (-) 648 WP_038427552.1 two-component system response regulator YhcZ Regulator
  CAH07_RS16385 (CAH07_16205) yhcY 3140820..3141959 (-) 1140 WP_139451261.1 two-component system sensor histidine kinase YhcY -
  CAH07_RS16390 (CAH07_16210) pgcA 3142108..3143853 (-) 1746 WP_038427550.1 phosphoglucomutase -
  CAH07_RS16395 (CAH07_16215) glpD 3143985..3145652 (-) 1668 WP_038427549.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24192.89 Da        Isoelectric Point: 6.5030

>NTDB_id=190590 CAH07_RS16380 WP_038427552.1 3140176..3140823(-) (vraR) [Bacillus subtilis strain SEM-9]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSKAIMLHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=190590 CAH07_RS16380 WP_038427552.1 3140176..3140823(-) (vraR) [Bacillus subtilis strain SEM-9]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTAAAGCTATTATGCTCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.498

97.209

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395

Multiple sequence alignment