Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L40_RS06875 Genome accession   NZ_CP016656
Coordinates   1300501..1300965 (+) Length   154 a.a.
NCBI ID   WP_025463168.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22769     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1295501..1305965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L40_RS06875 (A6L40_06875) comE 1300501..1300965 (+) 465 WP_025463168.1 ComEA family DNA-binding protein Machinery gene
  A6L40_RS06880 (A6L40_06880) - 1301077..1301283 (+) 207 WP_025461473.1 hypothetical protein -
  A6L40_RS06890 (A6L40_06890) - 1301841..1302494 (+) 654 WP_002241060.1 IS1595 family transposase -
  A6L40_RS06895 (A6L40_06895) - 1302659..1302868 (+) 210 Protein_1301 transposase -
  A6L40_RS06900 (A6L40_06900) - 1302850..1303107 (-) 258 WP_002241061.1 membrane protein -
  A6L40_RS06905 (A6L40_06905) aroG 1303774..1304829 (+) 1056 WP_002216371.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  A6L40_RS06910 (A6L40_06910) - 1304897..1305385 (+) 489 WP_002216373.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16561.83 Da        Isoelectric Point: 10.9695

>NTDB_id=190513 A6L40_RS06875 WP_025463168.1 1300501..1300965(+) (comE) [Neisseria meningitidis strain M22769]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=190513 A6L40_RS06875 WP_025463168.1 1300501..1300965(+) (comE) [Neisseria meningitidis strain M22769]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment