Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   CAC01_RS09780 Genome accession   NZ_CP021118
Coordinates   2408125..2409105 (-) Length   326 a.a.
NCBI ID   WP_043254746.1    Uniprot ID   -
Organism   Streptomyces sp. CLI2509 strain CLI2905     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2403125..2414105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAC01_RS09760 (CAC01_09715) - 2403276..2403470 (-) 195 WP_007822441.1 DUF2304 family protein -
  CAC01_RS09765 (CAC01_09720) - 2403694..2405832 (+) 2139 WP_095682169.1 prolyl oligopeptidase family serine peptidase -
  CAC01_RS09770 (CAC01_09725) - 2405816..2406760 (-) 945 WP_237301016.1 hypothetical protein -
  CAC01_RS09775 (CAC01_09730) - 2407011..2408138 (-) 1128 WP_093581005.1 dipeptide ABC transporter ATP-binding protein -
  CAC01_RS09780 (CAC01_09735) amiE 2408125..2409105 (-) 981 WP_043254746.1 ABC transporter ATP-binding protein Regulator
  CAC01_RS09785 (CAC01_09740) - 2409116..2410129 (-) 1014 WP_093852986.1 ABC transporter permease -
  CAC01_RS09790 (CAC01_09745) - 2410122..2411045 (-) 924 WP_009068515.1 ABC transporter permease -
  CAC01_RS09795 (CAC01_09750) - 2411161..2412801 (-) 1641 WP_007822449.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36104.79 Da        Isoelectric Point: 6.6595

>NTDB_id=190429 CAC01_RS09780 WP_043254746.1 2408125..2409105(-) (amiE) [Streptomyces sp. CLI2509 strain CLI2905]
MLLEVRDLHVEFATRDGVVKAVNGVSYDVDAGETLAVLGESGSGKSVTAQAIMGILDMPPGRIPSGEILFEGQDLLRMKE
DRRRKVRGAQIAMIFQDALSSLNPVLTVGQQLGEMFTVHQGMSQKDARAKAVELMERVRIPAAKERVRQYPHQFSGGMRQ
RIMIAMALALEPKLIIADEPTTALDVTVQAQVMDLLAELQREYHMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHE
IYKAPAHPYTEGLLQSIPRLDQKGRELYAIKGLPPNLLHIPDGCSFNPRCPRARERCLHDDPPLYEVSPTRASACHYWKE
TLDASR

Nucleotide


Download         Length: 981 bp        

>NTDB_id=190429 CAC01_RS09780 WP_043254746.1 2408125..2409105(-) (amiE) [Streptomyces sp. CLI2509 strain CLI2905]
ATGCTGCTGGAAGTGCGAGACCTGCACGTCGAGTTCGCGACCAGGGACGGCGTCGTCAAGGCCGTCAACGGGGTCAGCTA
CGACGTCGACGCGGGCGAGACCCTCGCCGTGCTCGGCGAGTCGGGCTCGGGGAAGTCCGTCACCGCCCAGGCGATCATGG
GCATCCTCGACATGCCGCCCGGCCGTATCCCCTCCGGCGAGATCCTCTTCGAGGGCCAGGACCTGCTGAGGATGAAGGAG
GACCGGCGGCGCAAGGTGCGCGGCGCGCAGATCGCGATGATCTTCCAGGACGCGCTCTCCTCGCTCAACCCCGTCCTCAC
CGTCGGCCAGCAACTCGGCGAGATGTTCACCGTCCACCAGGGCATGTCCCAGAAGGACGCCCGCGCCAAGGCCGTCGAAC
TCATGGAGCGGGTCCGCATCCCCGCCGCCAAGGAACGCGTGCGCCAGTACCCGCACCAGTTCTCCGGCGGGATGCGCCAG
CGCATCATGATCGCGATGGCGCTCGCCCTCGAACCCAAGCTGATCATCGCCGACGAGCCCACCACGGCGCTCGACGTGAC
GGTGCAGGCCCAGGTCATGGACCTGCTCGCGGAGTTGCAGCGCGAGTACCACATGGGCCTGATCCTCATCACCCACGACC
TCGGCGTGGTCGCCGACGTCGCGGACAAGATCGCCGTCATGTACGCGGGCCGCATCGTCGAGACCGCGCCCGTGCACGAG
ATCTACAAGGCCCCCGCGCACCCGTACACCGAGGGTCTCCTCCAGTCGATCCCGCGCCTGGACCAGAAGGGCCGCGAGCT
GTACGCGATCAAGGGGCTGCCGCCCAACCTCCTGCACATCCCGGACGGCTGCTCGTTCAACCCCCGCTGCCCGCGCGCCC
GCGAGCGCTGCCTGCACGACGACCCGCCGCTCTACGAGGTCTCGCCGACCAGGGCCAGCGCCTGCCACTACTGGAAGGAG
ACCCTCGATGCATCGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.758

98.773

0.482
  amiE Streptococcus thermophilus LMG 18311

48.137

98.773

0.475
  amiE Streptococcus thermophilus LMD-9

48.137

98.773

0.475
  oppD Streptococcus mutans UA159

47.771

96.319

0.46

Multiple sequence alignment