Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   A6L48_RS05290 Genome accession   NZ_CP016654
Coordinates   996242..997183 (+) Length   313 a.a.
NCBI ID   WP_002258538.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22811     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 991242..1002183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L48_RS05270 (A6L48_05270) - 992471..993058 (-) 588 WP_002258535.1 superoxide dismutase -
  A6L48_RS05275 (A6L48_05275) dnaB 993221..994627 (+) 1407 WP_002220671.1 replicative DNA helicase -
  A6L48_RS05280 (A6L48_05280) pilH 994936..995601 (+) 666 WP_002258536.1 GspH/FimT family pseudopilin Machinery gene
  A6L48_RS05285 (A6L48_05285) pilV 995631..996245 (+) 615 WP_002258537.1 type IV pilus modification protein PilV Machinery gene
  A6L48_RS05290 (A6L48_05290) pilJ 996242..997183 (+) 942 WP_002258538.1 PilW family protein Machinery gene
  A6L48_RS05295 (A6L48_05295) pilK 997162..997758 (+) 597 WP_002258539.1 pilus assembly PilX family protein Machinery gene
  A6L48_RS05300 (A6L48_05300) pilX 997763..998236 (+) 474 WP_002258540.1 PilX family type IV pilin Machinery gene
  A6L48_RS05315 (A6L48_05315) - 1001638..1002066 (-) 429 Protein_995 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34486.22 Da        Isoelectric Point: 9.2157

>NTDB_id=190410 A6L48_RS05290 WP_002258538.1 996242..997183(+) (pilJ) [Neisseria meningitidis strain M22811]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHLATDVVSDVAQKNRLFSLKRNSTNKLIPITESSNINYQNFFQVGSALIFQYGIDDVNASAATTVVSSCAAILK
PGKQILTLENVKKELNIPDTDNRQNGNIARQRHVVNAYAVGRIADEEGLFRFQLDDKGKWGNPQLLVKKVRHMKVRYIYV
SGCPEDDDAGKEETFKYTDKFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=190410 A6L48_RS05290 WP_002258538.1 996242..997183(+) (pilJ) [Neisseria meningitidis strain M22811]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCGAGAATGGCGGGCGGCTTCGGT
TGTTTCAATATGTCCGAGCATCTTGCAACTGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTCAAATATCAATTATCAGAATTTTTTCCAGGTTGGTAGCGCAT
TGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGCTGTGCCGCAATATTGAAA
CCGGGCAAGCAAATCCTTACTTTAGAAAATGTAAAAAAAGAATTGAATATTCCGGATACGGATAACAGGCAAAATGGCAA
TATTGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGGAAGGTTTGTTCCGCTTCCAAT
TGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACATATGAAAGTGCGGTATATCTATGTT
TCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAGCTCCACAAATGC
TGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTT
ATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

84.81

100

0.856

Multiple sequence alignment